Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46642 | Canola | nucleus | 75.88 | 89.27 |
| Bra012321.1-P | Field mustard | nucleus | 74.71 | 87.89 |
| CDY21356 | Canola | nucleus | 68.82 | 80.69 |
| AT1G22330.1 | Thale cress | nucleus | 65.0 | 75.94 |
| CDX87460 | Canola | nucleus | 55.88 | 66.67 |
| CDX88432 | Canola | nucleus | 55.29 | 66.2 |
| CDX68024 | Canola | nucleus | 53.53 | 64.31 |
| CDX79253 | Canola | nucleus | 52.35 | 63.57 |
| KRH16743 | Soybean | nucleus | 43.24 | 53.65 |
| KRH18921 | Soybean | nucleus | 43.24 | 53.26 |
| VIT_18s0001g05840.t01 | Wine grape | nucleus | 42.35 | 52.17 |
| Solyc04g074310.2.1 | Tomato | nucleus | 41.76 | 48.46 |
| KRH62327 | Soybean | nucleus | 40.88 | 48.43 |
| KRH53044 | Soybean | nucleus | 40.59 | 48.08 |
| CDY51790 | Canola | cytosol | 15.0 | 47.66 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 15.29 | 46.43 |
| CDY31859 | Canola | nucleus | 27.94 | 39.42 |
| CDY33653 | Canola | nucleus | 28.53 | 38.34 |
| CDY01349 | Canola | nucleus | 27.06 | 38.17 |
| CDX96615 | Canola | nucleus | 27.94 | 37.7 |
| CDY31508 | Canola | nucleus | 27.65 | 37.6 |
| CDX88283 | Canola | nucleus | 30.0 | 36.43 |
| CDY29496 | Canola | nucleus | 27.65 | 36.02 |
| CDY02889 | Canola | nucleus | 22.65 | 35.48 |
| CDX73279 | Canola | cytosol | 25.0 | 35.12 |
| CDY69197 | Canola | nucleus | 23.24 | 35.11 |
| CDY04769 | Canola | nucleus | 24.12 | 34.6 |
| CDX73451 | Canola | cytosol | 25.0 | 34.0 |
| CDY41556 | Canola | nucleus | 28.24 | 33.1 |
| CDX78261 | Canola | nucleus | 25.0 | 32.82 |
| CDY64698 | Canola | nucleus | 25.0 | 32.57 |
| CDX87594 | Canola | nucleus | 30.59 | 32.5 |
| CDY25759 | Canola | nucleus | 22.94 | 31.33 |
| CDX80046 | Canola | nucleus | 28.82 | 31.01 |
| CDY41557 | Canola | nucleus | 28.82 | 31.01 |
| CDY48016 | Canola | nucleus | 29.41 | 30.67 |
| CDY27523 | Canola | nucleus | 28.53 | 30.03 |
| CDY67263 | Canola | nucleus | 23.53 | 24.39 |
| CDY13339 | Canola | mitochondrion | 7.65 | 15.48 |
| CDY13782 | Canola | nucleus | 13.82 | 15.31 |
| CDY05301 | Canola | nucleus | 15.59 | 15.1 |
| CDY08023 | Canola | nucleus | 15.88 | 15.0 |
| CDX76950 | Canola | nucleus | 13.53 | 14.94 |
| CDY24106 | Canola | nucleus | 17.94 | 14.77 |
| CDY26001 | Canola | nucleus | 17.65 | 14.74 |
| CDY55846 | Canola | nucleus | 17.35 | 14.71 |
| CDY24657 | Canola | nucleus | 14.71 | 14.71 |
| CDX74070 | Canola | cytosol | 15.0 | 14.17 |
| CDY25867 | Canola | nucleus | 16.76 | 14.07 |
| CDY26229 | Canola | nucleus | 14.71 | 13.48 |
| CDY48318 | Canola | nucleus | 14.71 | 13.44 |
| CDY21399 | Canola | mitochondrion | 5.59 | 13.1 |
| CDY37724 | Canola | nucleus | 12.06 | 12.69 |
| CDY17173 | Canola | nucleus | 13.82 | 12.47 |
| CDY67299 | Canola | nucleus | 13.82 | 12.34 |
| CDY12068 | Canola | nucleus | 12.65 | 12.01 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 14.41 | 11.81 |
| CDX77783 | Canola | nucleus | 14.71 | 11.76 |
| CDX75170 | Canola | extracellular | 5.59 | 11.66 |
| CDX90262 | Canola | nucleus | 12.94 | 11.52 |
| CDY23739 | Canola | nucleus | 12.94 | 11.49 |
| CDX76015 | Canola | nucleus | 10.29 | 11.48 |
| CDY27186 | Canola | nucleus | 15.0 | 11.36 |
| CDY24201 | Canola | nucleus | 12.06 | 11.33 |
| CDY43360 | Canola | nucleus | 12.06 | 11.33 |
| CDY41059 | Canola | nucleus | 14.12 | 11.24 |
| CDX72106 | Canola | nucleus | 15.0 | 11.21 |
| CDY06947 | Canola | nucleus | 14.12 | 11.16 |
| CDY07975 | Canola | nucleus | 15.29 | 11.04 |
| CDX74030 | Canola | nucleus | 15.29 | 11.02 |
| CDY50131 | Canola | nucleus | 12.35 | 10.99 |
| CDX79527 | Canola | nucleus | 12.94 | 10.84 |
| CDY57580 | Canola | nucleus | 14.12 | 10.84 |
| CDY42724 | Canola | cytosol | 12.06 | 10.82 |
| CDX84689 | Canola | nucleus | 12.94 | 10.78 |
| CDY69852 | Canola | cytosol | 12.06 | 10.73 |
| CDY22136 | Canola | nucleus | 15.0 | 10.49 |
| CDY36753 | Canola | nucleus | 13.24 | 10.34 |
| CDY28918 | Canola | mitochondrion | 14.71 | 10.33 |
| CDY35966 | Canola | nucleus | 15.0 | 10.32 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 12.35 | 10.22 |
| CDY66272 | Canola | nucleus | 14.41 | 10.02 |
| CDY11989 | Canola | nucleus | 12.65 | 9.95 |
| CDX92807 | Canola | nucleus | 12.94 | 9.78 |
| CDX69279 | Canola | nucleus | 6.76 | 9.75 |
| CDY46690 | Canola | nucleus | 12.06 | 9.58 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 10.0 | 9.34 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 9.41 | 9.25 |
| CDY15850 | Canola | nucleus | 10.0 | 9.19 |
| CDX89316 | Canola | endoplasmic reticulum | 12.06 | 9.17 |
| CDY47382 | Canola | golgi, plastid | 11.18 | 9.13 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 9.71 | 9.09 |
| CDY46689 | Canola | nucleus | 12.35 | 9.07 |
| CDX94301 | Canola | nucleus | 11.76 | 9.05 |
| CDY36357 | Canola | nucleus | 14.12 | 8.86 |
| CDY42577 | Canola | nucleus | 14.12 | 8.81 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 9.12 | 8.54 |
| CDY25957 | Canola | nucleus | 13.82 | 8.5 |
| CDY40554 | Canola | nucleus | 14.41 | 7.47 |
| CDX69277 | Canola | mitochondrion | 2.65 | 4.84 |
Protein Annotations
| EnsemblPlants:CDY00446 | EnsemblPlantsGene:GSBRNA2T00110100001 | Gene3D:3.30.70.330 | GO:A0A078EH49 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF3 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY00446 | ProteinID:CDY00446.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF0277 | MapMan:35.1 | : |
Description
BnaC07g13800D
Coordinates
chrLK031918:+:1094086..1096258
Molecular Weight (calculated)
37777.1 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.624
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNTSYYRS PFGDTTFTKV FVGGLAWETP TEEMRRYFEQ FGEILEAVII TDKITGKSKG YGFVTFREPE SATRAVADPN PVIDGRKANC NIASFGQPRP
101: STPRGSGQGG SPSQYQGGGQ SGYSGMPGSL QQAATAQLMY PSYGYTYNSE YGYHQALYNT QLQQAQAQYY QQQMYGGGET SPSSSNIMPS PYYYLQAPSP
201: RPYSHQHYAH HINHQQQQQQ RLTSASSYLI HPSNFGVPTT FSNAPSSHEP ISSSTGTSLS SSVFCLLERH CLSPCMSNVK MHSSSNHDPS PLSTKSYCRN
301: IKTKLLVISC IYRVRKIKWN VTKRRVNDWA HGICNCVISM
101: STPRGSGQGG SPSQYQGGGQ SGYSGMPGSL QQAATAQLMY PSYGYTYNSE YGYHQALYNT QLQQAQAQYY QQQMYGGGET SPSSSNIMPS PYYYLQAPSP
201: RPYSHQHYAH HINHQQQQQQ RLTSASSYLI HPSNFGVPTT FSNAPSSHEP ISSSTGTSLS SSVFCLLERH CLSPCMSNVK MHSSSNHDPS PLSTKSYCRN
301: IKTKLLVISC IYRVRKIKWN VTKRRVNDWA HGICNCVISM
001: MSNTSYYRSP FGDTTHTKVF VGGLAWETPT DEMRRYFDQF GEILEAVIIT DKATGKSKGY GFVTFRDSDS ATRAVADPNP VIDGRKANCN IASFGRPRPS
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
101: TPRGRGQGGS PSQYQGGGQS SYTGMAAPVQ QAAAAQLMYP SYGYTYNSEY GYHQALYNAQ LQQAQYYQQQ MYGGGGATSP SSSNIMPSPY YYLQAPSPRP
201: YLHHQQHYQY HHHQQQQQQQ QQRLPSASSY LIYPSNVEAP TPSNVPTSQG PLSSSTESHA PQQVSEEGGE FDPTDAPEST TTNIRDLTSS S
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LME7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.