Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024928.1-P | Field mustard | nucleus | 96.39 | 95.24 |
| CDX77783 | Canola | nucleus | 93.73 | 91.53 |
| CDY41059 | Canola | nucleus | 85.78 | 83.37 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 84.82 | 77.7 |
| CDY28918 | Canola | mitochondrion | 87.71 | 75.21 |
| CDY50131 | Canola | nucleus | 59.52 | 64.66 |
| CDY25957 | Canola | nucleus | 84.58 | 63.47 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 59.52 | 60.1 |
| CDY40554 | Canola | nucleus | 87.47 | 55.34 |
| GSMUA_Achr10P... | Banana | nucleus | 47.71 | 45.0 |
| GSMUA_Achr10P... | Banana | nucleus | 48.92 | 44.13 |
| HORVU0Hr1G008280.1 | Barley | nucleus | 48.67 | 43.63 |
| TraesCS4A01G150600.1 | Wheat | nucleus | 48.67 | 43.63 |
| Os11t0637700-01 | Rice | plasma membrane | 48.92 | 43.47 |
| TraesCS4D01G152200.1 | Wheat | nucleus | 48.43 | 43.41 |
| TraesCSU01G068500.1 | Wheat | nucleus | 48.19 | 43.2 |
| CDY07975 | Canola | nucleus | 48.67 | 42.89 |
| CDX74030 | Canola | nucleus | 48.43 | 42.58 |
| Os07t0584500-01 | Rice | nucleus | 48.43 | 42.58 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 51.08 | 42.4 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 45.06 | 42.31 |
| CDY22136 | Canola | nucleus | 49.16 | 41.98 |
| Zm00001d019079_P001 | Maize | cytosol | 44.82 | 41.52 |
| Zm00001d007772_P001 | Maize | nucleus | 44.82 | 41.43 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 46.99 | 41.4 |
| CDY66272 | Canola | nucleus | 48.67 | 41.31 |
| CDY11989 | Canola | nucleus | 42.89 | 41.2 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 46.51 | 41.06 |
| EER96020 | Sorghum | nucleus | 44.82 | 40.88 |
| EER98147 | Sorghum | nucleus | 44.34 | 40.62 |
| CDY35966 | Canola | nucleus | 48.19 | 40.49 |
| CDY36753 | Canola | nucleus | 42.41 | 40.46 |
| EER97452 | Sorghum | nucleus | 45.78 | 40.34 |
| CDX94301 | Canola | nucleus | 42.41 | 39.82 |
| CDX92807 | Canola | nucleus | 43.13 | 39.78 |
| CDX89316 | Canola | endoplasmic reticulum | 42.65 | 39.6 |
| Zm00001d006704_P002 | Maize | nucleus | 45.3 | 38.84 |
| Zm00001d019084_P002 | Maize | nucleus | 42.41 | 38.77 |
| CDX75170 | Canola | extracellular | 15.18 | 38.65 |
| CDY46690 | Canola | nucleus | 39.76 | 38.55 |
| CDY46689 | Canola | nucleus | 42.41 | 38.01 |
| CDY12068 | Canola | nucleus | 32.29 | 37.43 |
| TraesCS2A01G190400.1 | Wheat | plastid | 46.27 | 36.16 |
| CDY23739 | Canola | nucleus | 33.25 | 36.03 |
| CDX90262 | Canola | nucleus | 33.01 | 35.86 |
| OQU83904 | Sorghum | nucleus | 38.55 | 35.56 |
| CDY17173 | Canola | nucleus | 32.05 | 35.28 |
| CDY67299 | Canola | nucleus | 32.29 | 35.17 |
| Zm00001d019086_P001 | Maize | nucleus | 45.06 | 35.15 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 45.54 | 34.94 |
| CDX84689 | Canola | nucleus | 33.01 | 33.58 |
| CDX79527 | Canola | nucleus | 32.77 | 33.5 |
| CDY37724 | Canola | nucleus | 25.54 | 32.82 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 49.4 | 30.19 |
| CDY24201 | Canola | nucleus | 25.54 | 29.28 |
| CDY43360 | Canola | nucleus | 25.54 | 29.28 |
| CDY26229 | Canola | nucleus | 26.02 | 29.11 |
| CDY48318 | Canola | nucleus | 26.02 | 29.03 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 24.82 | 28.37 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 24.82 | 28.3 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 23.13 | 27.75 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 23.86 | 27.27 |
| CDY51790 | Canola | cytosol | 6.99 | 27.1 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 7.23 | 26.79 |
| CDY69852 | Canola | cytosol | 21.93 | 23.82 |
| CDY42724 | Canola | cytosol | 21.69 | 23.75 |
| CDY36357 | Canola | nucleus | 29.4 | 22.51 |
| CDY42577 | Canola | nucleus | 28.92 | 22.02 |
| CDY04769 | Canola | nucleus | 12.53 | 21.94 |
| CDY25759 | Canola | nucleus | 13.01 | 21.69 |
| CDY69197 | Canola | nucleus | 11.57 | 21.33 |
| CDX69279 | Canola | nucleus | 12.05 | 21.19 |
| CDY31508 | Canola | nucleus | 12.53 | 20.8 |
| CDX73279 | Canola | cytosol | 11.81 | 20.25 |
| CDY33653 | Canola | nucleus | 12.29 | 20.16 |
| CDY01349 | Canola | nucleus | 11.57 | 19.92 |
| CDY31859 | Canola | nucleus | 11.57 | 19.92 |
| CDY29496 | Canola | nucleus | 12.29 | 19.54 |
| CDX96615 | Canola | nucleus | 11.81 | 19.44 |
| CDY02889 | Canola | nucleus | 10.12 | 19.35 |
| CDX88283 | Canola | nucleus | 12.53 | 18.57 |
| CDX73451 | Canola | cytosol | 10.84 | 18.0 |
| CDX68024 | Canola | nucleus | 12.05 | 17.67 |
| CDX88432 | Canola | nucleus | 12.05 | 17.61 |
| CDX87460 | Canola | nucleus | 12.05 | 17.54 |
| CDX79253 | Canola | nucleus | 11.81 | 17.5 |
| CDX78261 | Canola | nucleus | 10.84 | 17.37 |
| CDY21356 | Canola | nucleus | 12.05 | 17.24 |
| CDY41556 | Canola | nucleus | 12.05 | 17.24 |
| CDY08023 | Canola | nucleus | 14.46 | 16.67 |
| CDY46642 | Canola | nucleus | 11.57 | 16.61 |
| CDY67263 | Canola | nucleus | 13.01 | 16.46 |
| CDY26001 | Canola | nucleus | 16.14 | 16.46 |
| CDX80046 | Canola | nucleus | 12.53 | 16.46 |
| CDY27523 | Canola | nucleus | 12.77 | 16.41 |
| CDY25867 | Canola | nucleus | 15.9 | 16.3 |
| CDY48016 | Canola | nucleus | 12.77 | 16.26 |
| CDX87594 | Canola | nucleus | 12.53 | 16.25 |
| CDY24106 | Canola | nucleus | 16.14 | 16.22 |
| CDY55846 | Canola | nucleus | 15.66 | 16.21 |
| CDY41557 | Canola | nucleus | 12.29 | 16.14 |
| CDX74070 | Canola | cytosol | 13.98 | 16.11 |
| CDY64698 | Canola | nucleus | 9.88 | 15.71 |
| CDY13782 | Canola | nucleus | 11.08 | 14.98 |
| CDX76950 | Canola | nucleus | 10.84 | 14.61 |
| CDY21399 | Canola | mitochondrion | 5.06 | 14.48 |
| CDY00446 | Canola | nucleus | 11.81 | 14.41 |
| CDY24657 | Canola | nucleus | 11.33 | 13.82 |
| CDY27186 | Canola | nucleus | 14.7 | 13.59 |
| CDX72106 | Canola | nucleus | 14.7 | 13.41 |
| CDY05301 | Canola | nucleus | 11.33 | 13.39 |
| CDY57580 | Canola | nucleus | 13.49 | 12.64 |
| CDY13339 | Canola | mitochondrion | 5.06 | 12.5 |
| CDX76015 | Canola | nucleus | 9.16 | 12.46 |
| CDY06947 | Canola | nucleus | 12.77 | 12.33 |
| CDX69277 | Canola | mitochondrion | 5.3 | 11.83 |
| CDY15850 | Canola | nucleus | 10.36 | 11.62 |
| CDY47382 | Canola | golgi, plastid | 9.88 | 9.86 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078FX43 | UniProt:A0A078FX43 | EnsemblPlants:CDY17719 | ProteinID:CDY17719 |
| ProteinID:CDY17719.1 | InterPro:DAZAP1_RRM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00001944001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR44291 | PANTHER:PTHR44291:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EE1F82 | : | : | : | : | : |
Description
BnaA06g35380DBnaA06g35380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX43]
Coordinates
chrLK032076:+:718545..720613
Molecular Weight (calculated)
44508.2 Da
IEP (calculated)
9.429
GRAVY (calculated)
-0.348
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMESGKLFI GGISWETTED RLREYFQSFG EVLEAVIMKD RATGRARGFG FLVFADPIVA ERVVLLRHVI DGKLVEAKKA VPRDDHKSNS SLQGSPPGPA
101: NSKKIFVGGL ASSVTEAEFK KYFSQFGTIT DVVVMYDHRT QRPRGFGFIS YESEDAVDRV LRRTFHELNG KMVEVKLAVP KDPIRNQMNV NGFGSGRISA
201: LLMNEYSQGF STSPVSSYGV KPEVRYSPGV VNRGGFSPFG HGFGIDLNFE QDQTQSYGSG SSAGFGRPFS PGYTPSLSRA NGSVLNAAAK NHLWGNSGGL
301: GYMSNSPVSR SSFNGNSGMS SLGSIGDNWG GAGARARNSY RSEGGGLGLE AIRGVHVGVY SSGSNSLEAD SLYSDSAWLS LPAKAEERLG MGAFDFMSRG
401: PAGYINRQPN GGIAA
101: NSKKIFVGGL ASSVTEAEFK KYFSQFGTIT DVVVMYDHRT QRPRGFGFIS YESEDAVDRV LRRTFHELNG KMVEVKLAVP KDPIRNQMNV NGFGSGRISA
201: LLMNEYSQGF STSPVSSYGV KPEVRYSPGV VNRGGFSPFG HGFGIDLNFE QDQTQSYGSG SSAGFGRPFS PGYTPSLSRA NGSVLNAAAK NHLWGNSGGL
301: GYMSNSPVSR SSFNGNSGMS SLGSIGDNWG GAGARARNSY RSEGGGLGLE AIRGVHVGVY SSGSNSLEAD SLYSDSAWLS LPAKAEERLG MGAFDFMSRG
401: PAGYINRQPN GGIAA
001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.