Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04769 | Canola | nucleus | 97.24 | 59.49 |
| CDY69197 | Canola | nucleus | 85.52 | 55.11 |
| CDY25759 | Canola | nucleus | 84.83 | 49.4 |
| CDY67263 | Canola | nucleus | 84.14 | 37.2 |
| AT1G22910.3 | Thale cress | nucleus | 77.24 | 32.28 |
| CDY13339 | Canola | mitochondrion | 24.83 | 21.43 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 33.1 | 17.84 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 31.03 | 17.24 |
| PGSC0003DMT400008944 | Potato | nucleus | 31.03 | 17.05 |
| KRH23771 | Soybean | nucleus | 30.34 | 16.18 |
| KRH40033 | Soybean | nucleus | 30.34 | 16.18 |
| EES01849 | Sorghum | nucleus | 27.59 | 15.27 |
| CDX73279 | Canola | cytosol | 24.83 | 14.88 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 25.52 | 14.12 |
| GSMUA_Achr10P... | Banana | nucleus | 25.52 | 13.65 |
| Zm00001d042641_P001 | Maize | nucleus | 27.59 | 13.56 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 24.14 | 13.51 |
| Os01t0876800-00 | Rice | nucleus | 27.59 | 13.33 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 26.9 | 13.18 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 26.9 | 13.18 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 26.9 | 13.13 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 24.14 | 12.96 |
| CDY31859 | Canola | nucleus | 19.31 | 11.62 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 24.83 | 11.54 |
| CDY33653 | Canola | nucleus | 20.0 | 11.46 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 24.83 | 11.39 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 24.14 | 11.18 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 26.21 | 11.18 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 23.45 | 10.9 |
| CDY31508 | Canola | nucleus | 18.62 | 10.8 |
| CDY01349 | Canola | nucleus | 17.93 | 10.79 |
| CDY29496 | Canola | nucleus | 19.31 | 10.73 |
| CDX88283 | Canola | nucleus | 20.69 | 10.71 |
| CDY41556 | Canola | nucleus | 20.69 | 10.34 |
| CDX96615 | Canola | nucleus | 17.93 | 10.32 |
| CDX87594 | Canola | nucleus | 22.07 | 10.0 |
| Os01t0958500-01 | Rice | nucleus | 20.69 | 9.68 |
| CDX80046 | Canola | nucleus | 20.69 | 9.49 |
| EES02078 | Sorghum | nucleus | 22.07 | 9.47 |
| CDY48016 | Canola | nucleus | 20.0 | 8.9 |
| CDY41557 | Canola | nucleus | 19.31 | 8.86 |
| CDY27523 | Canola | nucleus | 19.31 | 8.67 |
| Zm00001d042042_P001 | Maize | nucleus | 19.31 | 8.24 |
| CDX87460 | Canola | nucleus | 15.86 | 8.07 |
| CDX73451 | Canola | cytosol | 13.79 | 8.0 |
| CDX78261 | Canola | nucleus | 13.79 | 7.72 |
| CDY64698 | Canola | nucleus | 13.79 | 7.66 |
| CDX88432 | Canola | nucleus | 14.48 | 7.39 |
| CDY46642 | Canola | nucleus | 13.1 | 6.57 |
| CDY21356 | Canola | nucleus | 13.1 | 6.55 |
| CDY02889 | Canola | nucleus | 9.66 | 6.45 |
| CDX68024 | Canola | nucleus | 12.41 | 6.36 |
| CDX79253 | Canola | nucleus | 11.72 | 6.07 |
| CDX69277 | Canola | mitochondrion | 7.59 | 5.91 |
| CDY37724 | Canola | nucleus | 13.1 | 5.88 |
| CDY41059 | Canola | nucleus | 16.55 | 5.62 |
| CDY00446 | Canola | nucleus | 13.1 | 5.59 |
| CDY24201 | Canola | nucleus | 13.79 | 5.52 |
| CDY43360 | Canola | nucleus | 13.79 | 5.52 |
| CDY23739 | Canola | nucleus | 14.48 | 5.48 |
| CDX77783 | Canola | nucleus | 15.86 | 5.41 |
| CDY42724 | Canola | cytosol | 13.79 | 5.28 |
| CDY69852 | Canola | cytosol | 13.79 | 5.24 |
| CDX79527 | Canola | nucleus | 14.48 | 5.17 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 14.48 | 5.06 |
| CDY46690 | Canola | nucleus | 14.48 | 4.91 |
| CDX84689 | Canola | nucleus | 13.79 | 4.9 |
| CDY26229 | Canola | nucleus | 12.41 | 4.85 |
| CDY48318 | Canola | nucleus | 12.41 | 4.84 |
| CDY67299 | Canola | nucleus | 12.41 | 4.72 |
| CDY07975 | Canola | nucleus | 15.17 | 4.67 |
| CDX74030 | Canola | nucleus | 15.17 | 4.66 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 21.38 | 4.65 |
| CDY46689 | Canola | nucleus | 14.48 | 4.54 |
| CDY22136 | Canola | nucleus | 15.17 | 4.53 |
| CDY17173 | Canola | nucleus | 11.72 | 4.51 |
| CDY12068 | Canola | nucleus | 11.03 | 4.47 |
| CDX90262 | Canola | nucleus | 11.72 | 4.45 |
| CDY36753 | Canola | nucleus | 13.1 | 4.37 |
| CDY28918 | Canola | mitochondrion | 14.48 | 4.34 |
| CDY35966 | Canola | nucleus | 14.48 | 4.25 |
| CDY66272 | Canola | nucleus | 13.79 | 4.09 |
| CDY25957 | Canola | nucleus | 15.17 | 3.98 |
| CDY11989 | Canola | nucleus | 11.72 | 3.94 |
| CDY50131 | Canola | nucleus | 10.34 | 3.93 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 11.03 | 3.89 |
| CDY36357 | Canola | nucleus | 14.48 | 3.87 |
| CDX94301 | Canola | nucleus | 11.72 | 3.85 |
| CDX92807 | Canola | nucleus | 11.72 | 3.78 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 8.97 | 3.76 |
| CDY42577 | Canola | nucleus | 13.79 | 3.67 |
| CDX89316 | Canola | endoplasmic reticulum | 11.03 | 3.58 |
| KRH62942 | Soybean | mitochondrion | 4.83 | 3.43 |
| CDX76015 | Canola | nucleus | 6.9 | 3.28 |
| KRH13261 | Soybean | cytosol | 2.76 | 3.23 |
| CDY25867 | Canola | nucleus | 8.97 | 3.21 |
| CDY40554 | Canola | nucleus | 14.48 | 3.2 |
| CDY26001 | Canola | nucleus | 8.97 | 3.19 |
| CDY24106 | Canola | nucleus | 8.97 | 3.15 |
| CDX75170 | Canola | extracellular | 3.45 | 3.07 |
| CDY06947 | Canola | nucleus | 8.97 | 3.02 |
| CDY57580 | Canola | nucleus | 8.97 | 2.93 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 6.9 | 2.75 |
| CDY55846 | Canola | nucleus | 7.59 | 2.74 |
| CDY27186 | Canola | nucleus | 8.28 | 2.67 |
| CDY24657 | Canola | nucleus | 6.21 | 2.65 |
| CDX72106 | Canola | nucleus | 8.28 | 2.64 |
| CDY05301 | Canola | nucleus | 6.21 | 2.56 |
| CDY08023 | Canola | nucleus | 6.21 | 2.5 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 6.21 | 2.48 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 6.21 | 2.47 |
| CDY47382 | Canola | golgi, plastid | 6.21 | 2.16 |
| CDX69279 | Canola | nucleus | 3.45 | 2.12 |
| CDX74070 | Canola | cytosol | 4.83 | 1.94 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 1.38 | 1.79 |
| CDY13782 | Canola | nucleus | 3.45 | 1.63 |
| CDX76950 | Canola | nucleus | 3.45 | 1.62 |
| CDY15850 | Canola | nucleus | 2.76 | 1.08 |
| KRH75298 | Soybean | cytosol, nucleus | 0.69 | 1.01 |
| CDY51790 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY21399 | EnsemblPlantsGene:GSBRNA2T00015777001 | PANTHER:PTHR44374 | PANTHER:PTHR44374:SF1 | ProteinID:CDY21399 | ProteinID:CDY21399.1 |
| SEG:seg | UniParc:UPI0004EEBFFC | UniProt:A0A078G7K9 | MapMan:35.2 | : | : |
Description
BnaA09g30280DBnaA09g30280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7K9]
Coordinates
chrLK032120:+:478830..480390
Molecular Weight (calculated)
15421.1 Da
IEP (calculated)
7.654
GRAVY (calculated)
-0.175
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MNVVGGRINN MRVMMSGTMQ TGFGPPPTFT HYPHLPLNLF GYSYSSDFSP FPTNLYGVYG CNSAGQYGLY GNGNGVSGGL TAAAASAAPF YPCGGGQGGV
101: QFSQPQPFYH HFSAYDNPHH YSPATISLQQ GVTGFPLQPP LIPYL
101: QFSQPQPFYH HFSAYDNPHH YSPATISLQQ GVTGFPLQPP LIPYL
001: MAGGIGLGDT TYTKVFVGGL AWETHKETMK KHFEQFGEIL EAVVITDKAS GRSKGYGFVT FREAEAARSA CVDATPVIDG RRANCNLASL GLQRSKPSTP
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
101: NHGGGGRINN MRVMMSTMQT GFGPPPPPQP PTFTHYPHLP LNLFGYSPYS PDYSSFPTNL YGMYGCTSGG QYGVYGNRNS GGGGLTAAAA SATPFYPCGG
201: GHGGVQFSQP QPFYHHLSSY NPHHYSPPTF SMQQGVTGFP LQPPLIPYR
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I321]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.