Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G76460.1 | Thale cress | nucleus | 90.0 | 88.42 |
| CDX87594 | Canola | nucleus | 96.79 | 84.69 |
| CDY33653 | Canola | nucleus | 71.79 | 79.45 |
| CDY31508 | Canola | nucleus | 70.36 | 78.8 |
| CDY29496 | Canola | nucleus | 73.21 | 78.54 |
| CDX96615 | Canola | nucleus | 70.0 | 77.78 |
| CDY31859 | Canola | nucleus | 66.07 | 76.76 |
| CDY01349 | Canola | nucleus | 66.07 | 76.76 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 82.14 | 73.72 |
| KRH51553 | Soybean | nucleus, plastid | 70.0 | 68.53 |
| KRH60871 | Soybean | nucleus, plastid | 69.64 | 68.18 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 67.14 | 65.96 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 51.43 | 51.06 |
| Solyc02g082270.2.1 | Tomato | nucleus | 51.07 | 50.71 |
| CDY51790 | Canola | cytosol | 17.5 | 45.79 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 18.21 | 45.54 |
| CDX73279 | Canola | cytosol | 37.14 | 42.98 |
| CDY69197 | Canola | nucleus | 33.21 | 41.33 |
| CDY04769 | Canola | nucleus | 34.29 | 40.51 |
| CDY02889 | Canola | nucleus | 30.71 | 39.63 |
| CDX73451 | Canola | cytosol | 34.64 | 38.8 |
| CDY25759 | Canola | nucleus | 33.57 | 37.75 |
| CDY64698 | Canola | nucleus | 35.0 | 37.55 |
| CDY41556 | Canola | nucleus | 38.21 | 36.9 |
| CDX87460 | Canola | nucleus | 37.5 | 36.84 |
| CDX88432 | Canola | nucleus | 37.14 | 36.62 |
| CDY21356 | Canola | nucleus | 37.86 | 36.55 |
| CDX78261 | Canola | nucleus | 33.57 | 36.29 |
| CDY46642 | Canola | nucleus | 37.14 | 35.99 |
| CDX68024 | Canola | nucleus | 36.07 | 35.69 |
| CDX79253 | Canola | nucleus | 35.0 | 35.0 |
| CDY41557 | Canola | nucleus | 39.29 | 34.81 |
| CDX80046 | Canola | nucleus | 38.93 | 34.49 |
| CDY48016 | Canola | nucleus | 38.57 | 33.13 |
| CDY27523 | Canola | nucleus | 37.86 | 32.82 |
| CDY00446 | Canola | nucleus | 36.43 | 30.0 |
| CDY67263 | Canola | nucleus | 34.29 | 29.27 |
| CDY13339 | Canola | mitochondrion | 14.29 | 23.81 |
| CDY21399 | Canola | mitochondrion | 10.71 | 20.69 |
| CDY05301 | Canola | nucleus | 21.79 | 17.38 |
| CDY24657 | Canola | nucleus | 21.07 | 17.35 |
| CDY26001 | Canola | nucleus | 24.29 | 16.71 |
| CDY55846 | Canola | nucleus | 23.57 | 16.46 |
| CDY25867 | Canola | nucleus | 23.57 | 16.3 |
| CDX76950 | Canola | nucleus | 17.86 | 16.23 |
| CDY24106 | Canola | nucleus | 23.93 | 16.22 |
| CDY12068 | Canola | nucleus | 20.71 | 16.2 |
| CDY13782 | Canola | nucleus | 17.5 | 15.96 |
| CDX90262 | Canola | nucleus | 21.43 | 15.71 |
| CDY37724 | Canola | nucleus | 17.5 | 15.17 |
| CDY26229 | Canola | nucleus | 20.0 | 15.09 |
| CDY48318 | Canola | nucleus | 20.0 | 15.05 |
| CDY08023 | Canola | nucleus | 19.29 | 15.0 |
| CDX74070 | Canola | cytosol | 19.29 | 15.0 |
| CDX84689 | Canola | nucleus | 21.07 | 14.46 |
| CDY67299 | Canola | nucleus | 19.64 | 14.44 |
| CDY23739 | Canola | nucleus | 19.64 | 14.36 |
| CDX79527 | Canola | nucleus | 20.71 | 14.29 |
| CDY17173 | Canola | nucleus | 18.93 | 14.06 |
| CDY24201 | Canola | nucleus | 17.5 | 13.54 |
| CDY43360 | Canola | nucleus | 17.5 | 13.54 |
| CDY06947 | Canola | nucleus | 20.71 | 13.49 |
| CDX77783 | Canola | nucleus | 20.0 | 13.18 |
| CDY41059 | Canola | nucleus | 20.0 | 13.11 |
| CDY57580 | Canola | nucleus | 20.71 | 13.09 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 16.07 | 13.01 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 16.79 | 12.91 |
| CDX76015 | Canola | nucleus | 13.93 | 12.79 |
| CDY27186 | Canola | nucleus | 20.36 | 12.69 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 16.43 | 12.67 |
| CDY42724 | Canola | cytosol | 17.14 | 12.66 |
| CDY69852 | Canola | cytosol | 17.14 | 12.57 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 18.57 | 12.53 |
| CDX72106 | Canola | nucleus | 20.36 | 12.53 |
| CDY50131 | Canola | nucleus | 16.79 | 12.3 |
| CDX75170 | Canola | extracellular | 7.14 | 12.27 |
| CDY15850 | Canola | nucleus | 16.07 | 12.16 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 15.0 | 11.57 |
| CDY07975 | Canola | nucleus | 19.29 | 11.46 |
| CDX74030 | Canola | nucleus | 19.29 | 11.44 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 16.79 | 11.44 |
| CDY28918 | Canola | mitochondrion | 19.64 | 11.36 |
| CDY22136 | Canola | nucleus | 19.29 | 11.11 |
| CDY11989 | Canola | nucleus | 16.79 | 10.88 |
| CDY36753 | Canola | nucleus | 16.79 | 10.8 |
| CDY46690 | Canola | nucleus | 16.43 | 10.75 |
| CDY36357 | Canola | nucleus | 20.71 | 10.7 |
| CDY42577 | Canola | nucleus | 20.71 | 10.64 |
| CDY66272 | Canola | nucleus | 18.57 | 10.63 |
| CDY35966 | Canola | nucleus | 18.57 | 10.53 |
| CDX92807 | Canola | nucleus | 16.43 | 10.22 |
| CDX69279 | Canola | nucleus | 8.57 | 10.17 |
| CDY46689 | Canola | nucleus | 16.79 | 10.15 |
| CDX94301 | Canola | nucleus | 15.71 | 9.95 |
| CDY25957 | Canola | nucleus | 19.64 | 9.95 |
| CDY47382 | Canola | golgi, plastid | 14.64 | 9.86 |
| CDX89316 | Canola | endoplasmic reticulum | 15.71 | 9.84 |
| CDY40554 | Canola | nucleus | 19.64 | 8.38 |
| CDX69277 | Canola | mitochondrion | 4.64 | 6.99 |
Protein Annotations
| EnsemblPlants:CDX88283 | EnsemblPlantsGene:GSBRNA2T00147779001 | Gene3D:3.30.70.330 | GO:A0A078DLY6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX88283 | ProteinID:CDX88283.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE128C | MapMan:35.1 | : |
Description
BnaC06g37270D
Coordinates
chrLK031855:-:144831..146805
Molecular Weight (calculated)
30418.8 Da
IEP (calculated)
8.993
GRAVY (calculated)
-0.423
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSEAL RRHFEQYGDI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPVID GRRANCNLAS
101: LGRPRPPLPY ALIPNIPGRL RPASPYIGNV QGPRGSPFGS YPYQQPLPYN YQQGLVYPYG VASYGPEYMY SQSQGLYGPY MGQQYLQVYG VPGAVNTPVY
201: QYGQFNQTVP SGQSYTALQG YSVPGSHVLQ LGGPTVSAMT TSSMPALQAP YPPGPAPAQS HIIVHPPQFM QSSSSDQTTR
101: LGRPRPPLPY ALIPNIPGRL RPASPYIGNV QGPRGSPFGS YPYQQPLPYN YQQGLVYPYG VASYGPEYMY SQSQGLYGPY MGQQYLQVYG VPGAVNTPVY
201: QYGQFNQTVP SGQSYTALQG YSVPGSHVLQ LGGPTVSAMT TSSMPALQAP YPPGPAPAQS HIIVHPPQFM QSSSSDQTTR
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.