Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G33470.1 | CDX76005 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | CDY56775 | AT3G56680.1 | 21798944 |
| AT1G33470.1 | CDY61685 | AT3G56680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G33470.1 | Thale cress | cytosol | 93.39 | 92.24 |
| CDY13339 | Canola | mitochondrion | 61.98 | 89.29 |
| Bra010203.1-P | Field mustard | nucleus | 96.28 | 76.39 |
| KRH75298 | Soybean | cytosol, nucleus | 26.86 | 65.66 |
| KRH13261 | Soybean | cytosol | 31.41 | 61.29 |
| KRH23771 | Soybean | nucleus | 52.48 | 46.69 |
| KRH40033 | Soybean | nucleus | 52.07 | 46.32 |
| VIT_18s0089g00920.t01 | Wine grape | nucleus | 51.24 | 46.1 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 48.76 | 45.21 |
| CDY51790 | Canola | cytosol | 19.83 | 44.86 |
| PGSC0003DMT400008944 | Potato | nucleus | 48.76 | 44.7 |
| CDY69197 | Canola | nucleus | 40.91 | 44.0 |
| CDY04769 | Canola | nucleus | 42.98 | 43.88 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 48.76 | 43.7 |
| GSMUA_Achr10P... | Banana | nucleus | 48.35 | 43.17 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 19.83 | 42.86 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 45.87 | 42.86 |
| EES01849 | Sorghum | nucleus | 46.28 | 42.75 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 45.45 | 41.98 |
| CDY25759 | Canola | nucleus | 42.98 | 41.77 |
| CDY31859 | Canola | nucleus | 39.67 | 39.83 |
| CDY31508 | Canola | nucleus | 40.91 | 39.6 |
| CDY01349 | Canola | nucleus | 38.84 | 39.0 |
| Os01t0876800-00 | Rice | nucleus | 48.35 | 39.0 |
| CDY33653 | Canola | nucleus | 40.5 | 38.74 |
| Zm00001d042641_P001 | Maize | nucleus | 47.11 | 38.64 |
| CDX96615 | Canola | nucleus | 40.08 | 38.49 |
| TraesCS3B01G419200.1 | Wheat | nucleus | 46.69 | 38.18 |
| TraesCS3D01G380100.1 | Wheat | nucleus | 46.69 | 38.18 |
| TraesCS3A01G389600.1 | Wheat | nucleus | 46.69 | 38.05 |
| KRH62942 | Soybean | mitochondrion | 31.82 | 37.75 |
| CDY29496 | Canola | nucleus | 40.08 | 37.16 |
| CDX88283 | Canola | nucleus | 42.98 | 37.14 |
| Os01t0958500-01 | Rice | nucleus | 47.11 | 36.77 |
| CDY41556 | Canola | nucleus | 43.8 | 36.55 |
| HORVU3Hr1G110370.1 | Barley | cytosol, mitochondrion, nucleus | 43.8 | 33.87 |
| CDX80046 | Canola | nucleus | 44.21 | 33.86 |
| CDX73451 | Canola | cytosol | 34.71 | 33.6 |
| TraesCS3A01G499100.1 | Wheat | cytosol, nucleus, plastid | 42.98 | 33.33 |
| TraesCS3B01G562300.3 | Wheat | mitochondrion | 42.98 | 33.33 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 46.69 | 33.24 |
| TraesCS3D01G505900.1 | Wheat | mitochondrion | 43.39 | 33.23 |
| CDY02889 | Canola | nucleus | 29.75 | 33.18 |
| CDY41557 | Canola | nucleus | 42.98 | 32.91 |
| CDX87594 | Canola | nucleus | 43.39 | 32.81 |
| EES02078 | Sorghum | nucleus | 45.45 | 32.54 |
| CDY48016 | Canola | nucleus | 43.8 | 32.52 |
| CDY27523 | Canola | nucleus | 43.39 | 32.51 |
| CDY67263 | Canola | nucleus | 42.98 | 31.71 |
| CDY64698 | Canola | nucleus | 33.88 | 31.42 |
| CDX78261 | Canola | nucleus | 33.47 | 31.27 |
| Zm00001d042042_P001 | Maize | nucleus | 42.98 | 30.59 |
| CDY46642 | Canola | nucleus | 35.95 | 30.1 |
| CDX68024 | Canola | nucleus | 35.12 | 30.04 |
| CDX87460 | Canola | nucleus | 35.12 | 29.82 |
| CDY21356 | Canola | nucleus | 35.54 | 29.66 |
| CDX88432 | Canola | nucleus | 34.3 | 29.23 |
| CDX79253 | Canola | nucleus | 33.47 | 28.93 |
| CDY00446 | Canola | nucleus | 35.12 | 25.0 |
| CDY21399 | Canola | mitochondrion | 14.88 | 24.83 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 42.15 | 15.29 |
| CDY08023 | Canola | nucleus | 22.73 | 15.28 |
| CDY12068 | Canola | nucleus | 22.31 | 15.08 |
| CDY26001 | Canola | nucleus | 25.21 | 14.99 |
| CDY13782 | Canola | nucleus | 19.01 | 14.98 |
| CDY55846 | Canola | nucleus | 24.79 | 14.96 |
| CDY26229 | Canola | nucleus | 22.73 | 14.82 |
| CDY05301 | Canola | nucleus | 21.49 | 14.81 |
| CDY48318 | Canola | nucleus | 22.73 | 14.78 |
| CDY24106 | Canola | nucleus | 25.21 | 14.77 |
| CDX74070 | Canola | cytosol | 21.9 | 14.72 |
| CDX76950 | Canola | nucleus | 18.59 | 14.61 |
| CDY25867 | Canola | nucleus | 24.38 | 14.57 |
| CDY24657 | Canola | nucleus | 20.25 | 14.41 |
| CDX90262 | Canola | nucleus | 22.73 | 14.4 |
| CDY37724 | Canola | nucleus | 19.01 | 14.24 |
| CDY67299 | Canola | nucleus | 21.9 | 13.91 |
| CDY17173 | Canola | nucleus | 21.07 | 13.53 |
| CDY23739 | Canola | nucleus | 21.07 | 13.32 |
| CDY42724 | Canola | cytosol | 20.25 | 12.93 |
| CDY69852 | Canola | cytosol | 20.25 | 12.83 |
| CDX79527 | Canola | nucleus | 21.49 | 12.81 |
| CDX84689 | Canola | nucleus | 21.49 | 12.75 |
| CDY50131 | Canola | nucleus | 19.83 | 12.57 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 17.77 | 12.43 |
| CDX77783 | Canola | nucleus | 21.07 | 12.0 |
| CDY24201 | Canola | nucleus | 17.77 | 11.88 |
| CDY43360 | Canola | nucleus | 17.77 | 11.88 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 17.77 | 11.85 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 17.77 | 11.81 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 20.25 | 11.81 |
| CDY41059 | Canola | nucleus | 20.66 | 11.71 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 19.83 | 11.68 |
| CDY36753 | Canola | nucleus | 20.25 | 11.26 |
| CDX74030 | Canola | nucleus | 21.9 | 11.23 |
| CDY07975 | Canola | nucleus | 21.49 | 11.04 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 16.53 | 11.02 |
| CDY46690 | Canola | nucleus | 19.42 | 10.98 |
| CDY06947 | Canola | nucleus | 19.42 | 10.93 |
| CDY11989 | Canola | nucleus | 19.42 | 10.88 |
| CDY27186 | Canola | nucleus | 19.83 | 10.69 |
| CDY57580 | Canola | nucleus | 19.42 | 10.61 |
| CDX69279 | Canola | nucleus | 10.33 | 10.59 |
| CDX72106 | Canola | nucleus | 19.83 | 10.55 |
| CDY15850 | Canola | nucleus | 16.12 | 10.54 |
| CDY22136 | Canola | nucleus | 21.07 | 10.49 |
| CDX76015 | Canola | nucleus | 13.22 | 10.49 |
| CDX94301 | Canola | nucleus | 19.01 | 10.41 |
| CDY28918 | Canola | mitochondrion | 20.66 | 10.33 |
| CDY35966 | Canola | nucleus | 21.07 | 10.32 |
| CDY66272 | Canola | nucleus | 20.66 | 10.22 |
| CDX92807 | Canola | nucleus | 19.01 | 10.22 |
| CDY46689 | Canola | nucleus | 19.42 | 10.15 |
| CDX89316 | Canola | endoplasmic reticulum | 18.59 | 10.07 |
| CDX75170 | Canola | extracellular | 6.61 | 9.82 |
| CDY25957 | Canola | nucleus | 20.66 | 9.04 |
| CDY36357 | Canola | nucleus | 19.83 | 8.86 |
| CDY42577 | Canola | nucleus | 19.83 | 8.81 |
| CDY47382 | Canola | golgi, plastid | 14.46 | 8.41 |
| CDY40554 | Canola | nucleus | 20.66 | 7.62 |
| CDX69277 | Canola | mitochondrion | 4.13 | 5.38 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078CAQ0 | EnsemblPlants:CDX73279 | ProteinID:CDX73279 | ProteinID:CDX73279.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00106341001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44374 |
| PANTHER:PTHR44374:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE1CF8 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g28270D
Coordinates
chrLK031798:+:677575..680053
Molecular Weight (calculated)
25907.3 Da
IEP (calculated)
7.995
GRAVY (calculated)
-0.203
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDTTFTKVF VGGLAWETNK VSLRSYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACIDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GGRGVKVTSP FKTHFGSAAA LPSPIPFSHY TLPYTNPYGF SSYSMDYNYP TSYYNVYGGA TAQHPMYSTG PMTGVAAAAA AYYPYLQFAE GNGPVTGYAP
201: LHYPNHMFHY STGGNYPHHN GSPVSLAPSP VIPSVCFAVP QA
101: GGRGVKVTSP FKTHFGSAAA LPSPIPFSHY TLPYTNPYGF SSYSMDYNYP TSYYNVYGGA TAQHPMYSTG PMTGVAAAAA AYYPYLQFAE GNGPVTGYAP
201: LHYPNHMFHY STGGNYPHHN GSPVSLAPSP VIPSVCFAVP QA
001: MEDTTFTKVF VGGLAWETHK VSLRNYFEQF GDIVEAVVIT DKSSGRSKGY GFVTFCDPEA AQKACVDPAP VIDGRRANCN LAAFGVQRSK PSSPIHGHVG
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
101: GRGMKVTSPF KTHFGTAATA IPSPLPFSHY TLPYTNPFGF SSYSMDYNYP TSYYNVYGGA TAQHPMYGSG PMTGVAAAPA AGFYPYLQFA EGNGPVTGYA
201: PLHYPNHMFH YSAPGGNYPH HNGSPVSLAP SPVIPSVCFA VPQA
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q67YS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.