Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | CDY12358 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY27132 | AT1G31750.1 | 21798944 |
| AT2G33410.1 | CDY06428 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY27533 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | CDY37307 | AT3G21215.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021850.1-P | Field mustard | nucleus | 96.28 | 84.74 |
| CDY23739 | Canola | nucleus | 95.36 | 80.42 |
| CDX79527 | Canola | nucleus | 88.85 | 70.69 |
| CDY67299 | Canola | nucleus | 82.66 | 70.08 |
| AT2G33410.1 | Thale cress | nucleus | 87.62 | 70.05 |
| CDX84689 | Canola | nucleus | 87.62 | 69.36 |
| CDY17173 | Canola | nucleus | 80.81 | 69.23 |
| KRH07772 | Soybean | cytosol | 16.41 | 54.08 |
| CDY12068 | Canola | nucleus | 53.87 | 48.6 |
| CDX90262 | Canola | nucleus | 55.73 | 47.12 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 67.49 | 46.98 |
| KRG92276 | Soybean | endoplasmic reticulum | 63.78 | 43.28 |
| Solyc09g090520.2.1 | Tomato | nucleus | 63.47 | 43.16 |
| KRH34534 | Soybean | nucleus | 62.85 | 43.1 |
| PGSC0003DMT400044195 | Potato | nucleus | 63.16 | 42.95 |
| Solyc03g005680.2.1 | Tomato | nucleus | 55.11 | 41.69 |
| PGSC0003DMT400035000 | Potato | nucleus | 56.35 | 41.18 |
| KXG38359 | Sorghum | nucleus | 55.11 | 39.29 |
| TraesCS1B01G168200.1 | Wheat | nucleus | 54.49 | 38.94 |
| TraesCS1A01G150600.1 | Wheat | nucleus | 54.49 | 38.77 |
| TraesCS1D01G147600.1 | Wheat | nucleus | 54.49 | 38.77 |
| Zm00001d032739_P001 | Maize | nucleus | 52.94 | 38.6 |
| Zm00001d014058_P002 | Maize | plastid | 52.94 | 35.48 |
| HORVU1Hr1G039790.1 | Barley | nucleus | 54.18 | 34.31 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 41.18 | 32.92 |
| CDY07975 | Canola | nucleus | 38.39 | 26.33 |
| CDY41059 | Canola | nucleus | 34.67 | 26.23 |
| CDY46690 | Canola | nucleus | 34.67 | 26.17 |
| CDX94301 | Canola | nucleus | 35.6 | 26.02 |
| CDY66272 | Canola | nucleus | 39.32 | 25.97 |
| CDX74030 | Canola | nucleus | 37.77 | 25.85 |
| CDY36753 | Canola | nucleus | 34.67 | 25.75 |
| CDY26229 | Canola | nucleus | 29.41 | 25.61 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 32.82 | 25.54 |
| CDY35966 | Canola | nucleus | 39.01 | 25.51 |
| CDX89316 | Canola | endoplasmic reticulum | 35.29 | 25.5 |
| CDY11989 | Canola | nucleus | 34.06 | 25.46 |
| CDX92807 | Canola | nucleus | 35.29 | 25.33 |
| CDY46689 | Canola | nucleus | 36.22 | 25.27 |
| CDY48318 | Canola | nucleus | 29.1 | 25.27 |
| CDY51790 | Canola | cytosol | 8.36 | 25.23 |
| CDY24201 | Canola | nucleus | 28.17 | 25.14 |
| CDY22136 | Canola | nucleus | 37.77 | 25.1 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 8.67 | 25.0 |
| CDX77783 | Canola | nucleus | 32.82 | 24.94 |
| CDY43360 | Canola | nucleus | 27.86 | 24.86 |
| CDY50131 | Canola | nucleus | 28.48 | 24.08 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 29.1 | 22.87 |
| CDY28918 | Canola | mitochondrion | 33.75 | 22.52 |
| CDY42061 | Canola | cytosol, nucleus, plastid | 24.15 | 21.49 |
| CDY69852 | Canola | cytosol | 25.08 | 21.2 |
| CDY48851 | Canola | cytosol, nucleus, peroxisome | 23.84 | 21.15 |
| CDY42724 | Canola | cytosol | 24.77 | 21.11 |
| CDY45879 | Canola | cytosol, nucleus, plastid | 22.6 | 21.1 |
| CDY25957 | Canola | nucleus | 34.67 | 20.25 |
| CDY44555 | Canola | cytosol, nucleus, plastid | 22.6 | 20.11 |
| CDY31859 | Canola | nucleus | 14.86 | 19.92 |
| CDY33653 | Canola | nucleus | 15.48 | 19.76 |
| CDY69197 | Canola | nucleus | 13.62 | 19.56 |
| CDY04769 | Canola | nucleus | 14.24 | 19.41 |
| CDY31508 | Canola | nucleus | 14.86 | 19.2 |
| CDY01349 | Canola | nucleus | 14.24 | 19.09 |
| CDX96615 | Canola | nucleus | 14.86 | 19.05 |
| CDX73279 | Canola | cytosol | 14.24 | 19.01 |
| CDY36357 | Canola | nucleus | 31.58 | 18.82 |
| CDY42577 | Canola | nucleus | 31.58 | 18.72 |
| CDY29496 | Canola | nucleus | 14.55 | 18.01 |
| CDY25759 | Canola | nucleus | 13.62 | 17.67 |
| CDX88283 | Canola | nucleus | 15.17 | 17.5 |
| CDX75170 | Canola | extracellular | 8.36 | 16.56 |
| CDX69279 | Canola | nucleus | 12.07 | 16.53 |
| CDY24106 | Canola | nucleus | 20.74 | 16.22 |
| CDY40554 | Canola | nucleus | 32.82 | 16.16 |
| CDY02889 | Canola | nucleus | 10.84 | 16.13 |
| CDY26001 | Canola | nucleus | 20.12 | 15.97 |
| CDY55846 | Canola | nucleus | 19.81 | 15.96 |
| CDY25867 | Canola | nucleus | 19.2 | 15.31 |
| CDY41556 | Canola | nucleus | 13.62 | 15.17 |
| CDX69277 | Canola | mitochondrion | 8.67 | 15.05 |
| CDX87594 | Canola | nucleus | 14.86 | 15.0 |
| CDX76950 | Canola | nucleus | 13.93 | 14.61 |
| CDX73451 | Canola | cytosol | 11.15 | 14.4 |
| CDX87460 | Canola | nucleus | 12.69 | 14.39 |
| CDY27523 | Canola | nucleus | 14.24 | 14.24 |
| CDY64698 | Canola | nucleus | 11.46 | 14.18 |
| CDX68024 | Canola | nucleus | 12.38 | 14.13 |
| CDY48016 | Canola | nucleus | 14.24 | 14.11 |
| CDX88432 | Canola | nucleus | 12.38 | 14.08 |
| CDY67263 | Canola | nucleus | 14.24 | 14.02 |
| CDY13782 | Canola | nucleus | 13.31 | 14.01 |
| CDX80046 | Canola | nucleus | 13.62 | 13.92 |
| CDY41557 | Canola | nucleus | 13.62 | 13.92 |
| CDY21356 | Canola | nucleus | 12.38 | 13.79 |
| CDX79253 | Canola | nucleus | 11.76 | 13.57 |
| CDX78261 | Canola | nucleus | 10.84 | 13.51 |
| CDY46642 | Canola | nucleus | 12.07 | 13.49 |
| CDY21399 | Canola | mitochondrion | 5.88 | 13.1 |
| CDY13339 | Canola | mitochondrion | 6.5 | 12.5 |
| CDY27186 | Canola | nucleus | 17.34 | 12.47 |
| CDX76015 | Canola | nucleus | 11.76 | 12.46 |
| CDY06947 | Canola | nucleus | 16.41 | 12.33 |
| CDX72106 | Canola | nucleus | 17.34 | 12.31 |
| CDY00446 | Canola | nucleus | 12.69 | 12.06 |
| CDY57580 | Canola | nucleus | 16.41 | 11.96 |
| CDY24657 | Canola | nucleus | 12.38 | 11.76 |
| CDY05301 | Canola | nucleus | 12.38 | 11.4 |
| CDY08023 | Canola | nucleus | 12.07 | 10.83 |
| CDY47382 | Canola | golgi, plastid | 13.93 | 10.82 |
| CDX74070 | Canola | cytosol | 11.76 | 10.56 |
| CDY15850 | Canola | nucleus | 11.76 | 10.27 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078HK91 | UniProt:A0A078HK91 | EnsemblPlants:CDY37724 | ProteinID:CDY37724 |
| ProteinID:CDY37724.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00064625001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44291 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE2ABA | SEG:seg |
Description
BnaA04g19440DBnaA04g19440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK91]
Coordinates
chrLK032406:-:218718..220189
Molecular Weight (calculated)
32641.3 Da
IEP (calculated)
8.538
GRAVY (calculated)
-0.596
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDQGKLFI GGISWDTDEN LLREYFSNYG EVLQVTVMRE KATGRPRGFG FVSFSDPAVI DRLLQSKHHI DNRDVDVKRA MSREEQSSGG GSRPVGSFDN
101: VRTKKIFVGD SVDLVLHKTF HDLNGKQVEV KRALPKDANP GVVGGGGGRV GGGFSGYGGG GYEGRVDSSR YLPPQNAGSG YPPYGGSGYG YGSNGVGYGG
201: FGGYGNPSGA PYGNPGVAGA GFGSGPRSSW GGQPPSGYGN VGYGNAPWGG SGGPGSAVMG QGGASAGYGY APSGYGAVGG RPNSLGGGYA DVSDGSGGYG
301: NHQGNGQGGY GGGFGSGHQA LQQ
101: VRTKKIFVGD SVDLVLHKTF HDLNGKQVEV KRALPKDANP GVVGGGGGRV GGGFSGYGGG GYEGRVDSSR YLPPQNAGSG YPPYGGSGYG YGSNGVGYGG
201: FGGYGNPSGA PYGNPGVAGA GFGSGPRSSW GGQPPSGYGN VGYGNAPWGG SGGPGSAVMG QGGASAGYGY APSGYGAVGG RPNSLGGGYA DVSDGSGGYG
301: NHQGNGQGGY GGGFGSGHQA LQQ
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.