Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
- plastid 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P05000_001 | |
| GSMUA_Achr4P16360_001 | |
| GSMUA_Achr9P19610_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33410.1 | GSMUA_Achr2P05000_001 | AT3G21215.1 | 21798944 |
| AT2G33410.1 | GSMUA_Achr9P19610_001 | AT3G21215.1 | 21798944 |
| AT4G14300.1 | GSMUA_Achr4P16360_001 | AT2G16950.1 | 14756317 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P10970_001 | Banana | nucleus | 71.53 | 66.28 |
| GSMUA_Achr10P... | Banana | nucleus | 36.88 | 60.08 |
| VIT_05s0049g01660.t01 | Wine grape | nucleus | 62.38 | 54.31 |
| KRH34534 | Soybean | nucleus | 59.65 | 51.17 |
| AT4G14300.1 | Thale cress | nucleus | 51.49 | 50.61 |
| KRG92276 | Soybean | endoplasmic reticulum | 59.41 | 50.42 |
| Solyc09g090520.2.1 | Tomato | nucleus | 59.16 | 50.32 |
| PGSC0003DMT400044195 | Potato | nucleus | 58.91 | 50.11 |
| PGSC0003DMT400035000 | Potato | nucleus | 54.21 | 49.55 |
| CDY12068 | Canola | nucleus | 43.32 | 48.88 |
| Solyc03g005680.2.1 | Tomato | nucleus | 51.49 | 48.71 |
| CDX79527 | Canola | nucleus | 48.51 | 48.28 |
| AT2G33410.1 | Thale cress | nucleus | 48.27 | 48.27 |
| Bra010757.1-P | Field mustard | nucleus | 45.3 | 47.91 |
| CDX90262 | Canola | nucleus | 45.05 | 47.64 |
| CDX84689 | Canola | nucleus | 48.02 | 47.55 |
| Bra022938.1-P | Field mustard | nucleus | 47.52 | 47.06 |
| CDY23739 | Canola | nucleus | 44.55 | 47.0 |
| Bra005496.1-P | Field mustard | nucleus | 43.56 | 46.81 |
| CDY17173 | Canola | nucleus | 43.56 | 46.68 |
| CDY67299 | Canola | nucleus | 43.81 | 46.46 |
| Bra021850.1-P | Field mustard | nucleus | 42.08 | 46.32 |
| CDY37724 | Canola | nucleus | 32.92 | 41.18 |
| GSMUA_Achr10P... | Banana | nucleus | 31.68 | 29.09 |
| GSMUA_Achr10P... | Banana | nucleus | 31.19 | 27.39 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 29.21 | 26.7 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 21.78 | 25.96 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 31.93 | 25.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.79 | 25.53 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 21.04 | 25.22 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 21.04 | 25.15 |
| GSMUA_Achr10P... | Banana | nucleus | 20.3 | 24.62 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 19.8 | 24.32 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 22.28 | 23.75 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 20.54 | 23.12 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 12.13 | 21.3 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 31.93 | 19.0 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 20.3 | 18.55 |
| GSMUA_Achr5P17700_001 | Banana | cytosol | 3.22 | 13.98 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 10.64 | 12.84 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 8.42 | 11.72 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 7.67 | 11.48 |
| GSMUA_Achr10P... | Banana | nucleus | 7.67 | 11.44 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 4.21 | 11.26 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 6.93 | 10.69 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 9.41 | 10.22 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 9.65 | 10.05 |
| GSMUA_Achr11P... | Banana | nucleus | 6.44 | 9.81 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 10.4 | 9.68 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 6.19 | 9.65 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 6.44 | 9.32 |
| KRH07772 | Soybean | cytosol | 2.23 | 9.18 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 10.15 | 8.8 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 5.69 | 8.71 |
| GSMUA_Achr4P32300_001 | Banana | nucleus | 2.97 | 8.16 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 3.47 | 7.91 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 3.47 | 7.73 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 2.72 | 6.92 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 3.96 | 6.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.68 | 6.29 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 6.19 | 5.66 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 6.44 | 3.9 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 2.23 | 3.73 |
| GSMUA_Achr10P... | Banana | nucleus | 1.98 | 3.46 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P17690_001 | EnsemblPlants:GSMUA_Achr5T17690_001 | EnsemblPlantsGene:GSMUA_Achr5G17690_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:DAZAP1_RRM2 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002965ADE | UniProt:M0SZE8 | MapMan:35.1 | : |
Description
RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G17690_001]
Coordinates
chr5:-:18410880..18414421
Molecular Weight (calculated)
41002.3 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.657
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVLLRYLES LCLTYDAPHT YSVEAKRALS REEQQTSARS GNPVVGRSVG TTAGANIRTK KIFVGGLPPT LTEDGFREYF ESYGPVTDAV VMYDQNTHRP
101: RGFGFISFDS EDTVDKVLQK SFHDLDGKLV EVKRALPKDA NPNTGSGRSM GSGPYQPYGG SSGNTSSYDG TPDANRYAQP QAAGGGYPTY GSSGYGTPGY
201: GYGAANNGVG YAGYGVGGYG NATVGYSGPT GAYPNPNVPA AGYVGGNPGA QRNLWSNQAP TGYGSAGYGG GTTYGPASSW NASASSVGSG AAPTGQGVTP
301: GYVSQGYGYG TYGGSEGPYG NQGGYGSSGG RPVSNPSGNS GEQGVGSAYM AGGYGDANAG AGYPNSWRSD PSPYGVTQAN GPPGGPVSYG GGYGGSQGRQ
401: AQQQ
101: RGFGFISFDS EDTVDKVLQK SFHDLDGKLV EVKRALPKDA NPNTGSGRSM GSGPYQPYGG SSGNTSSYDG TPDANRYAQP QAAGGGYPTY GSSGYGTPGY
201: GYGAANNGVG YAGYGVGGYG NATVGYSGPT GAYPNPNVPA AGYVGGNPGA QRNLWSNQAP TGYGSAGYGG GTTYGPASSW NASASSVGSG AAPTGQGVTP
301: GYVSQGYGYG TYGGSEGPYG NQGGYGSSGG RPVSNPSGNS GEQGVGSAYM AGGYGDANAG AGYPNSWRSD PSPYGVTQAN GPPGGPVSYG GGYGGSQGRQ
401: AQQQ
001: MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
101: FDSGANVRTK KIFVGGLPPA LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV EVKRALPKDA NPGIASGGGR
201: GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301: NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ
401: AQQQ
Arabidopsis Description
Putative RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:O22791]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.