Factsheet for GSMUA_Achr9P12410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g06300.t01	Wine grape	nucleus	66.87	65.5
KRH67043	Soybean	nucleus	63.28	62.35
KRG95365	Soybean	nucleus	62.09	61.9
GSMUA_Achr5P17700_001	Banana	cytosol	11.34	40.86
GSMUA_Achr5P09550_001	Banana	nucleus	36.42	32.8
GSMUA_Achr5P09540_001	Banana	nucleus	36.12	31.19
GSMUA_Achr10P...	Banana	nucleus	21.49	31.17
GSMUA_Achr4P09830_001	Banana	mitochondrion	13.73	30.46
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	12.84	27.04
GSMUA_Achr9P14920_001	Banana	plastid	14.03	26.55
GSMUA_Achr7P00730_001	Banana	cytosol	14.03	25.97
GSMUA_AchrUn_...	Banana	nucleus	31.64	24.71
GSMUA_Achr4P09210_001	Banana	nucleus	32.24	24.43
GSMUA_Achr10P...	Banana	nucleus	17.61	23.79
GSMUA_Achr6P15950_001	Banana	nucleus	31.34	22.53
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	28.96	22.35
GSMUA_Achr7P13480_001	Banana	nucleus	22.39	22.26
GSMUA_AchrUn_...	Banana	mitochondrion	15.52	21.58
GSMUA_Achr3P21850_001	Banana	nucleus	16.72	21.37
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	16.72	20.74
GSMUA_Achr10P...	Banana	nucleus	16.72	20.66
GSMUA_Achr8P08440_001	Banana	nucleus	15.82	20.46
GSMUA_Achr10P...	Banana	nucleus	20.0	20.12
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	17.01	19.66
GSMUA_Achr9P12880_001	Banana	cytosol	13.43	19.57
GSMUA_Achr11P...	Banana	nucleus	15.22	19.25
GSMUA_AchrUn_...	Banana	cytosol	18.81	19.15
GSMUA_Achr8P23460_001	Banana	nucleus	13.43	19.07
GSMUA_Achr4P32300_001	Banana	nucleus	8.36	19.05
GSMUA_Achr1P19260_001	Banana	nucleus	18.81	18.64
GSMUA_Achr1P09440_001	Banana	cytosol	18.81	18.58
GSMUA_Achr5P05400_001	Banana	mitochondrion	14.33	18.18
GSMUA_Achr8P25380_001	Banana	nucleus	20.0	17.68
GSMUA_Achr3P13820_001	Banana	cytosol	14.33	17.2
GSMUA_Achr4P28100_001	Banana	nucleus	20.3	15.38
GSMUA_Achr1P10970_001	Banana	nucleus	20.0	15.37
GSMUA_Achr10P...	Banana	nucleus	20.0	15.23
GSMUA_Achr4P33100_001	Banana	nucleus	20.0	15.16
GSMUA_Achr10P...	Banana	nucleus	19.7	14.35
GSMUA_Achr2P14710_001	Banana	cytosol	14.93	13.93
GSMUA_Achr6P10970_001	Banana	nucleus	19.4	13.0
GSMUA_Achr4P24260_001	Banana	cytosol	11.64	11.85
GSMUA_Achr5P17690_001	Banana	nucleus	12.84	10.64
GSMUA_Achr3P02300_001	Banana	nucleus	20.0	9.87
GSMUA_Achr6P24180_001	Banana	cytosol	15.22	7.65

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSMUA_Achr9G12410_001	EnsemblPlants:GSMUA_Achr9P12410_001	EnsemblPlants:GSMUA_Achr9T12410_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0TZQ0
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000294EBF7
SEG:seg	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G12410_001]

Coordinates

chr9:+:8099297..8104653

Molecular Weight (calculated)

36113.1 Da

IEP (calculated)

8.388

GRAVY (calculated)

-0.233

Length

335 amino acids

Sequence
(BLAST)

001: MEDSKKRKLE EEGGSGGAFA MEFSKQLRFL LDPLRKDQLV DLLVKLGNQY PSVAEEIKGL ASEDPVHRKL FVRGLSWETT SETLCAVFSV HGEIEEGAVI
101: VDKATGKSRG YGFITYKHME STQKALQEPS KLIDGRLAVC NLACEGLSST SVTSDLALRK IYIGGLSPDI SSENLLSFFS RHGEIEEGSV AYDKETNKSR
201: GFGFVTFRTV EAAKKAIDDP NKTLGGRNIT VKLADSPKSK IMQSQVPAAM VPITIPVPVG YAQTGKAQIG SSATVGYASY PPALAAYPVA YPNAQIQYPT
301: APQVSYPQTA KRESVGLPAV ASTGITGFPY YVTKP

Best Arabidopsis Sequence Match ( AT2G41060.1 )
(BLAST)

001: MTKKRKLESE SNETSEPTEK QQQQCEKEDP EIRNVDNQRD DDEQVVEQDT LKEMHEEEAK GEDNIEAETS SGSGNQGNED DDEEEPIEDL LEPFSKDQLL
101: ILLKEAAERH RDVANRIRIV ADEDLVHRKI FVHGLGWDTK ADSLIDAFKQ YGEIEDCKCV VDKVSGQSKG YGFILFKSRS GARNALKQPQ KKIGTRMTAC
201: QLASIGPVQG NPVVAPAQHF NPENVQRKIY VSNVSADIDP QKLLEFFSRF GEIEEGPLGL DKATGRPKGF ALFVYRSLES AKKALEEPHK TFEGHVLHCH
301: KANDGPKQVK QHQHNHNSHN QNSRYQRNDN NGYGAPGGHG HFIAGNNQAV QAFNPAIGQA LTALLASQGA GLGLNQAFGQ ALLGTLGTAS PGAVGGMPSG
401: YGTQANISPG VYPGYGAQAG YQGGYQTQQP GQGGAGRGQH GAGYGGPYMG R

Arabidopsis Description

UBA2BUBP1-associated protein 2B [Source:UniProtKB/Swiss-Prot;Acc:O80678]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.