Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P17700_001 | Banana | cytosol | 23.13 | 36.56 |
| GSMUA_Achr7P00730_001 | Banana | cytosol | 29.93 | 24.31 |
| GSMUA_Achr4P28100_001 | Banana | nucleus | 53.06 | 17.65 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 17.69 | 17.22 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 18.37 | 16.98 |
| GSMUA_Achr10P... | Banana | nucleus | 26.53 | 15.73 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 18.37 | 15.25 |
| Zm00001d034200_P001 | Maize | nucleus | 17.01 | 14.62 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.13 | 14.11 |
| GSMUA_Achr9P12880_001 | Banana | cytosol | 19.05 | 12.17 |
| TraesCS5D01G415400.1 | Wheat | nucleus | 28.57 | 12.14 |
| GSMUA_Achr10P... | Banana | nucleus | 19.05 | 12.12 |
| TraesCS5B01G410100.1 | Wheat | nucleus | 28.57 | 11.97 |
| HORVU5Hr1G098440.5 | Barley | cytosol, nucleus | 29.25 | 11.88 |
| Zm00001d018730_P001 | Maize | nucleus | 29.25 | 11.5 |
| GSMUA_Achr3P21850_001 | Banana | nucleus | 20.41 | 11.45 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 18.37 | 11.44 |
| Zm00001d007839_P001 | Maize | cytosol | 28.57 | 11.35 |
| GSMUA_Achr11P... | Banana | nucleus | 20.41 | 11.32 |
| EER95824 | Sorghum | cytosol | 29.25 | 11.29 |
| GSMUA_Achr8P08440_001 | Banana | nucleus | 19.73 | 11.2 |
| GSMUA_Achr6P17510_001 | Banana | cytosol, mitochondrion, nucleus | 20.41 | 11.11 |
| GSMUA_Achr10P... | Banana | nucleus | 20.41 | 11.07 |
| TraesCS2A01G267500.1 | Wheat | nucleus | 27.89 | 11.02 |
| HORVU2Hr1G061380.2 | Barley | nucleus | 27.89 | 11.02 |
| GSMUA_Achr7P13480_001 | Banana | nucleus | 25.17 | 10.98 |
| TraesCS2D01G256500.1 | Wheat | nucleus | 27.89 | 10.96 |
| TraesCS5A01G405300.1 | Wheat | nucleus | 26.53 | 10.86 |
| GSMUA_Achr10P... | Banana | nucleus | 24.49 | 10.81 |
| Os07t0124600-01 | Rice | nucleus | 27.21 | 10.61 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 20.41 | 10.34 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 18.37 | 10.23 |
| GSMUA_Achr10P... | Banana | nucleus | 30.61 | 10.23 |
| Zm00001d034201_P001 | Maize | nucleus | 17.01 | 9.96 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 29.25 | 9.73 |
| GSMUA_Achr3P13820_001 | Banana | cytosol | 18.37 | 9.68 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 32.65 | 9.6 |
| KXG37469 | Sorghum | cytosol | 19.73 | 9.57 |
| GSMUA_Achr10P... | Banana | nucleus | 29.93 | 9.57 |
| GSMUA_Achr1P19260_001 | Banana | nucleus | 21.77 | 9.47 |
| GSMUA_Achr1P10970_001 | Banana | nucleus | 27.21 | 9.17 |
| GSMUA_Achr2P14710_001 | Banana | cytosol | 21.77 | 8.91 |
| GSMUA_Achr8P25380_001 | Banana | nucleus | 21.77 | 8.44 |
| GSMUA_Achr9P12410_001 | Banana | nucleus | 19.05 | 8.36 |
| GSMUA_Achr5P09550_001 | Banana | nucleus | 21.09 | 8.33 |
| GSMUA_Achr5P09540_001 | Banana | nucleus | 21.77 | 8.25 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.37 | 8.21 |
| GSMUA_Achr1P09440_001 | Banana | cytosol | 17.69 | 7.67 |
| GSMUA_Achr4P09210_001 | Banana | nucleus | 20.41 | 6.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 19.73 | 6.76 |
| GSMUA_Achr4P24260_001 | Banana | cytosol | 14.97 | 6.69 |
| GSMUA_Achr6P15950_001 | Banana | nucleus | 21.09 | 6.65 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 30.61 | 6.63 |
| GSMUA_Achr10P... | Banana | mitochondrion, nucleus | 19.05 | 6.45 |
| GSMUA_Achr6P24180_001 | Banana | cytosol | 21.09 | 4.65 |
| GSMUA_Achr5P17690_001 | Banana | nucleus | 8.16 | 2.97 |
| CDX69277 | Canola | mitochondrion | 0.68 | 0.54 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P32300_001 | EnsemblPlants:GSMUA_Achr4T32300_001 | EnsemblPlantsGene:GSMUA_Achr4G32300_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR44291 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002949E81 | UniProt:M0STZ2 | MapMan:35.2 | : | : |
Description
Putative Heterogeneous nuclear ribonucleoprotein A1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G32300_001]
Coordinates
chr4:-:29132099..29133630
Molecular Weight (calculated)
16604.6 Da
IEP (calculated)
10.512
GRAVY (calculated)
-0.765
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPTSPSSSS SPPEVAEPSS SSSSSLTQPE QRTKLFVGGI SSDTQEKDLE EHFRAFGELK QVMVLRDRVT GIGRGFGFVL FAHPEGAETA LKNPKHVILR
101: RTVEVKQAIP RDKIHQNQNP NQTRGTLWRW YYRKASTSWM GSLYRSR
101: RTVEVKQAIP RDKIHQNQNP NQTRGTLWRW YYRKASTSWM GSLYRSR
001: MEQKMESASD LGKLFIGGIS WDTDEERLQE YFGKYGDLVE AVIMRDRTTG RARGFGFIVF ADPSVAERVI MDKHIIDGRT VEAKKAVPRD DQQVLKRHAS
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
101: PMHLISPSHG GNGGGARTKK IFVGGLPSSI TEAEFKNYFD QFGTIADVVV MYDHNTQRPR GFGFITFDSE ESVDMVLHKT FHELNGKMVE VKRAVPKELS
201: STTPNRSPLI GYGNNYGVVP NRSSANSYFN SFPPGYNNNN LGSAGRFSPI GSGRNAFSSF GLGLNQELNL NSNFDGNTLG YSRIPGNQYF NSASPNRYNS
301: PIGYNRGDSA YNPSNRDLWG NRSDSSGPGW NLGVSVGNNR GNWGLSSVVS DNNGYGRSYG AGSGLSGLSF AGNTNGFDGS IGELYRGSSV YSDSTWQQSM
401: PHHQSSNELD GLSRSYGFGI DNVGSDPSAN ASEGYSGNYN VGNRQTHRGI EA
Arabidopsis Description
AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.