Factsheet for GSMUA_Achr4P09830_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06540_001	Banana	nucleus, plastid	46.36	44.03
AT5G53720.1	Thale cress	cytosol	29.14	44.0
CDY51790	Canola	cytosol	31.13	43.93
CDY28822	Canola	cytosol, nucleus, plastid	31.13	41.96
GSMUA_Achr9P14920_001	Banana	plastid	47.68	40.68
GSMUA_Achr5P17700_001	Banana	cytosol	22.52	36.56
Solyc04g082770.2.1	Tomato	cytosol, extracellular, nucleus, plastid	56.29	35.27
GSMUA_AchrUn_...	Banana	mitochondrion	51.66	32.37
GSMUA_Achr8P23460_001	Banana	nucleus	50.33	32.2
GSMUA_Achr8P24330_001	Banana	nucleus, plastid	60.93	31.72
GSMUA_Achr3P21850_001	Banana	nucleus	52.32	30.15
PGSC0003DMT400025900	Potato	nucleus	56.29	29.62
GSMUA_Achr5P05400_001	Banana	mitochondrion	51.66	29.55
GSMUA_Achr8P08440_001	Banana	nucleus	50.33	29.34
GSMUA_Achr6P17510_001	Banana	cytosol, mitochondrion, nucleus	52.32	29.26
GSMUA_Achr10P...	Banana	nucleus	52.32	29.15
AT5G11412.1	Thale cress	endoplasmic reticulum	33.77	29.14
KRH53608	Soybean	nucleus	46.36	28.46
KRH64318	Soybean	nucleus	48.34	28.4
AT5G53680.1	Thale cress	cytosol	31.79	28.4
GSMUA_Achr11P...	Banana	nucleus	44.37	25.28
GSMUA_Achr3P13820_001	Banana	cytosol	45.7	24.73
GSMUA_Achr10P...	Banana	nucleus	29.8	19.48
GSMUA_Achr7P00730_001	Banana	cytosol	21.85	18.23
GSMUA_Achr4P32300_001	Banana	nucleus	17.22	17.69
GSMUA_Achr10P...	Banana	nucleus	26.49	16.13
Bra029612.1-P	Field mustard	nucleus	29.8	15.68
AT3G06970.1	Thale cress	nucleus	31.13	14.83
GSMUA_Achr9P12410_001	Banana	nucleus	30.46	13.73
CDY24657	Canola	nucleus	30.46	13.53
GSMUA_Achr9P12880_001	Banana	cytosol	20.53	13.48
CDY05301	Canola	nucleus	31.13	13.39
CDY08023	Canola	nucleus	31.13	13.06
CDX74070	Canola	cytosol	30.46	12.78
Bra001228.1-P	Field mustard	cytosol	29.8	12.43
GSMUA_Achr10P...	Banana	nucleus	27.15	12.31
GSMUA_Achr6P24180_001	Banana	cytosol	54.3	12.29
GSMUA_Achr7P13480_001	Banana	nucleus	27.15	12.17
GSMUA_Achr5P09550_001	Banana	nucleus	29.14	11.83
GSMUA_Achr1P19260_001	Banana	nucleus	25.83	11.54
GSMUA_Achr5P09540_001	Banana	nucleus	29.14	11.34
GSMUA_AchrUn_...	Banana	nucleus	30.46	10.72
GSMUA_Achr10P...	Banana	nucleus	31.13	10.68
GSMUA_Achr4P09210_001	Banana	nucleus	30.46	10.41
GSMUA_AchrUn_...	Banana	cytosol	22.52	10.33
GSMUA_Achr1P10970_001	Banana	nucleus	29.8	10.32
GSMUA_Achr2P14710_001	Banana	cytosol	24.5	10.31
GSMUA_Achr8P25380_001	Banana	nucleus	25.83	10.29
GSMUA_Achr10P...	Banana	nucleus	29.8	9.78
GSMUA_Achr1P09440_001	Banana	cytosol	21.85	9.73
GSMUA_Achr4P33100_001	Banana	nucleus	28.48	9.73
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	27.15	9.45
GSMUA_Achr6P15950_001	Banana	nucleus	28.48	9.23
GSMUA_Achr6P10970_001	Banana	nucleus	29.14	8.8
GSMUA_Achr4P28100_001	Banana	nucleus	23.18	7.92
GSMUA_Achr4P24260_001	Banana	cytosol	15.23	6.99
GSMUA_Achr3P02300_001	Banana	nucleus	30.46	6.77
GSMUA_Achr5P17690_001	Banana	nucleus	11.26	4.21

Protein Annotations

EnsemblPlants:GSMUA_Achr4P09830_001	EnsemblPlants:GSMUA_Achr4T09830_001	EnsemblPlantsGene:GSMUA_Achr4G09830_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PANTHER:PTHR44828:SF1	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000296D57D	UniProt:M0SMK0	MapMan:35.1	:	:

Description

RNA recognition motif containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G09830_001]

Coordinates

chr4:-:7136510..7141781

Molecular Weight (calculated)

16955.3 Da

IEP (calculated)

9.643

GRAVY (calculated)

-0.185

Length

151 amino acids

Sequence
(BLAST)

001: MLLPLKQINT YRKVFVGGLA WETKNETLRR HFEQFGEILE AVVIADKKAG RWKGYGFVTF RDPESARRAC ADQSPLIDGR RANCNLASLG RLGTFPTFGD
101: LYIGAVSLPR GSYVGSAAPQ QSVPFSYREG LPYLPYSLFW LWSINSVSPM E

Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.