Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 64.11 | 76.35 |
| GSMUA_Achr8P24330_001 | Banana | nucleus, plastid | 57.84 | 57.24 |
| GSMUA_Achr4P09830_001 | Banana | mitochondrion | 29.62 | 56.29 |
| HORVU6Hr1G070150.1 | Barley | plastid | 30.66 | 52.69 |
| Os02t0714000-01 | Rice | nucleus, plastid | 51.92 | 51.92 |
| GSMUA_Achr9P14920_001 | Banana | plastid | 31.36 | 50.85 |
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 49.83 | 50.71 |
| GSMUA_Achr3P06540_001 | Banana | nucleus, plastid | 27.53 | 49.69 |
| HORVU6Hr1G070140.3 | Barley | plastid | 26.83 | 49.36 |
| AT5G53720.1 | Thale cress | cytosol | 17.07 | 49.0 |
| TraesCS7B01G299000.1 | Wheat | mitochondrion, nucleus, plastid | 48.43 | 48.77 |
| TraesCS7A01G398200.1 | Wheat | cytosol, mitochondrion, nucleus | 48.08 | 48.76 |
| Os06t0622900-01 | Rice | cytosol, mitochondrion, nucleus | 46.69 | 48.73 |
| OQU85520 | Sorghum | nucleus, plastid | 49.83 | 48.47 |
| TraesCS6D01G258900.4 | Wheat | plastid | 48.43 | 48.26 |
| TraesCS7D01G392500.1 | Wheat | cytosol, nucleus, plastid | 48.08 | 48.08 |
| TraesCS6A01G278300.3 | Wheat | plastid | 48.43 | 47.6 |
| Os02t0755400-01 | Rice | plastid | 28.92 | 47.16 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 45.64 | 46.95 |
| CDY51790 | Canola | cytosol | 17.42 | 46.73 |
| CDY28822 | Canola | cytosol, nucleus, plastid | 18.12 | 46.43 |
| TraesCS6B01G306600.1 | Wheat | plastid | 45.99 | 46.32 |
| EER90058 | Sorghum | plastid | 45.99 | 46.15 |
| HORVU7Hr1G093450.6 | Barley | nucleus | 46.69 | 45.58 |
| Zm00001d052212_P001 | Maize | nucleus | 24.39 | 43.48 |
| HORVU6Hr1G070170.1 | Barley | mitochondrion, nucleus, plastid | 49.13 | 42.47 |
| GSMUA_Achr8P23460_001 | Banana | nucleus | 34.49 | 41.95 |
| PGSC0003DMT400008944 | Potato | nucleus | 38.33 | 41.67 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 34.49 | 41.08 |
| GSMUA_Achr5P05400_001 | Banana | mitochondrion | 36.93 | 40.15 |
| KRH53608 | Soybean | nucleus | 34.15 | 39.84 |
| KRH64318 | Soybean | nucleus | 35.19 | 39.3 |
| TraesCS4D01G225900.1 | Wheat | nucleus | 32.4 | 37.35 |
| PGSC0003DMT400027411 | Potato | nucleus | 32.75 | 37.01 |
| TraesCS4A01G068100.1 | Wheat | nucleus | 32.06 | 36.95 |
| AT5G53680.1 | Thale cress | cytosol | 21.6 | 36.69 |
| Zm00001d046716_P001 | Maize | nucleus | 45.99 | 36.67 |
| Zm00001d017829_P002 | Maize | plastid | 43.21 | 35.94 |
| Zm00001d051627_P002 | Maize | plastid | 44.6 | 34.78 |
| TraesCS4B01G225300.1 | Wheat | nucleus | 32.75 | 34.43 |
| TraesCS6B01G348100.1 | Wheat | plastid | 36.93 | 34.08 |
| TraesCS6D01G297300.1 | Wheat | plastid | 36.93 | 33.97 |
| HORVU4Hr1G063360.1 | Barley | nucleus | 32.4 | 33.94 |
| HORVU7Hr1G036920.2 | Barley | mitochondrion, nucleus | 35.19 | 33.78 |
| TraesCS7A01G178700.2 | Wheat | nucleus | 35.54 | 33.55 |
| HORVU6Hr1G078060.1 | Barley | plastid | 36.93 | 33.54 |
| TraesCS7D01G180800.1 | Wheat | nucleus | 34.84 | 33.22 |
| TraesCS7B01G084600.1 | Wheat | nucleus | 34.49 | 33.0 |
| Os06t0220600-01 | Rice | plastid | 38.68 | 32.36 |
| AT5G11412.1 | Thale cress | endoplasmic reticulum | 19.16 | 31.43 |
| KXG30724 | Sorghum | plastid | 33.8 | 31.29 |
| Zm00001d037209_P001 | Maize | plastid | 35.89 | 31.02 |
| Zm00001d018103_P002 | Maize | plasma membrane | 33.8 | 30.5 |
| OQU76075 | Sorghum | plastid | 36.59 | 29.75 |
| TraesCS6A01G318100.1 | Wheat | nucleus | 36.24 | 21.36 |
| AT3G06970.1 | Thale cress | nucleus | 21.25 | 19.24 |
| Bra029612.1-P | Field mustard | nucleus | 19.16 | 19.16 |
| PGSC0003DMT400032256 | Potato | nucleus | 19.51 | 17.95 |
| PGSC0003DMT400044868 | Potato | nucleus | 20.56 | 17.25 |
| CDY05301 | Canola | nucleus | 20.56 | 16.81 |
| PGSC0003DMT400008213 | Potato | nucleus | 24.39 | 16.51 |
| CDY24657 | Canola | nucleus | 19.51 | 16.47 |
| PGSC0003DMT400039802 | Potato | nucleus | 25.44 | 16.37 |
| CDY08023 | Canola | nucleus | 20.21 | 16.11 |
| CDX74070 | Canola | cytosol | 19.86 | 15.83 |
| Bra001228.1-P | Field mustard | cytosol | 19.86 | 15.75 |
| PGSC0003DMT400006638 | Potato | nucleus | 20.91 | 15.54 |
| PGSC0003DMT400012372 | Potato | nucleus | 16.03 | 15.49 |
| PGSC0003DMT400032811 | Potato | nucleus | 19.86 | 14.65 |
| PGSC0003DMT400031418 | Potato | extracellular, golgi | 18.12 | 14.29 |
| PGSC0003DMT400009762 | Potato | nucleus | 19.51 | 14.11 |
| PGSC0003DMT400012369 | Potato | nucleus | 21.25 | 13.96 |
| PGSC0003DMT400035000 | Potato | nucleus | 21.25 | 13.8 |
| PGSC0003DMT400010280 | Potato | cytosol | 17.77 | 13.75 |
| PGSC0003DMT400044195 | Potato | nucleus | 22.65 | 13.68 |
| PGSC0003DMT400012586 | Potato | nucleus | 16.38 | 13.66 |
| PGSC0003DMT400072501 | Potato | nucleus | 19.51 | 13.59 |
| PGSC0003DMT400074192 | Potato | nucleus | 21.95 | 13.29 |
| PGSC0003DMT400037271 | Potato | nucleus | 21.6 | 13.19 |
| PGSC0003DMT400058431 | Potato | nucleus | 21.6 | 12.65 |
| PGSC0003DMT400016249 | Potato | nucleus | 21.25 | 12.4 |
| PGSC0003DMT400060554 | Potato | nucleus | 19.86 | 12.13 |
| PGSC0003DMT400076643 | Potato | nucleus | 19.86 | 12.03 |
| PGSC0003DMT400034757 | Potato | nucleus | 18.82 | 11.54 |
| PGSC0003DMT400044866 | Potato | extracellular | 20.21 | 10.86 |
| PGSC0003DMT400031324 | Potato | cytosol | 4.18 | 8.63 |
| PGSC0003DMT400008583 | Potato | nucleus | 14.98 | 7.19 |
Protein Annotations
| EntrezGene:102584346 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1AMB1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| EnsemblPlantsGene:PGSC0003DMG400009999 | PGSC:PGSC0003DMG400009999 | EnsemblPlants:PGSC0003DMT400025900 | PFscan:PS50102 | PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002952D57 | RefSeq:XP_006342180.1 |
| SEG:seg | : | : | : | : | : |
Description
RNA recognition motif-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009999]
Coordinates
chr4:-:71937406..71943727
Molecular Weight (calculated)
30621.8 Da
IEP (calculated)
8.809
GRAVY (calculated)
-0.354
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQQQPPAQ GPGSSAAGSG VPFFNSPFGD TTFTKVFVGG LAWETQSDTL RRFFEQFGEI LEAVVITDKN TGRSKGYGFV TFRDPESTRR ACADPAPIID
101: GRRANCNLAS LGRPRPSVQF GRLRSSTPFP AGLPAARGAY AGSFGYQQPV SYGYQQGLMY SPYGYATYGA DYVYPQGVYN PYGGQQYLPI YGVPGTVNAT
201: MYPYGQLSQA VPGSHSYTTL QGYAMPGHQI LQFGGPGVNA MTASSIPTIQ APYQTGVGAP VTPQTQFILP THSPQFMQGS GSDQNAG
101: GRRANCNLAS LGRPRPSVQF GRLRSSTPFP AGLPAARGAY AGSFGYQQPV SYGYQQGLMY SPYGYATYGA DYVYPQGVYN PYGGQQYLPI YGVPGTVNAT
201: MYPYGQLSQA VPGSHSYTTL QGYAMPGHQI LQFGGPGVNA MTASSIPTIQ APYQTGVGAP VTPQTQFILP THSPQFMQGS GSDQNAG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.