Factsheet for PGSC0003DMT400060554

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014820.2.1	Tomato	cytosol	54.68	95.9
PGSC0003DMT400034757	Potato	nucleus	69.15	69.44
PGSC0003DMT400037271	Potato	nucleus	56.81	56.81
PGSC0003DMT400074192	Potato	nucleus	56.17	55.7
PGSC0003DMT400076643	Potato	nucleus	55.53	55.06
GSMUA_Achr10P...	Banana	nucleus	51.28	54.77
Os11t0637700-01	Rice	plasma membrane	52.55	52.89
GSMUA_Achr10P...	Banana	nucleus	51.7	52.83
TraesCS4A01G150600.1	Wheat	nucleus	51.91	52.7
HORVU0Hr1G008280.1	Barley	nucleus	51.7	52.48
TraesCS4D01G152200.1	Wheat	nucleus	51.7	52.48
TraesCSU01G068500.1	Wheat	nucleus	51.49	52.27
GSMUA_Achr4P33100_001	Banana	nucleus	47.66	50.68
GSMUA_Achr6P10970_001	Banana	nucleus	53.62	50.4
Zm00001d007772_P001	Maize	nucleus	48.09	50.33
Os07t0584500-01	Rice	nucleus	50.43	50.21
EER97452	Sorghum	nucleus	49.79	49.68
TraesCS2B01G216600.2	Wheat	cytosol	49.57	49.47
TraesCS2D01G197500.2	Wheat	nucleus	49.36	49.36
Zm00001d019079_P001	Maize	cytosol	47.02	49.33
EER96020	Sorghum	nucleus	47.45	49.01
EER98147	Sorghum	nucleus	47.23	49.01
Zm00001d006704_P002	Maize	nucleus	50.0	48.55
Zm00001d019084_P002	Maize	nucleus	45.96	47.58
TraesCS2A01G190400.1	Wheat	plastid	48.94	43.31
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	49.15	42.7
Zm00001d019086_P001	Maize	nucleus	47.66	42.11
OQU83904	Sorghum	nucleus	38.94	40.67
GSMUA_Achr3P02300_001	Banana	nucleus	50.85	35.2
PGSC0003DMT400035000	Potato	nucleus	32.77	34.84
PGSC0003DMT400009762	Potato	nucleus	29.36	34.76
PGSC0003DMT400044195	Potato	nucleus	33.83	33.47
PGSC0003DMT400012586	Potato	nucleus	24.26	33.14
PGSC0003DMT400044868	Potato	nucleus	24.04	33.04
PGSC0003DMT400012372	Potato	nucleus	20.21	31.99
PGSC0003DMT400006638	Potato	nucleus	25.11	30.57
PGSC0003DMT400032811	Potato	nucleus	24.68	29.82
PGSC0003DMT400012369	Potato	nucleus	25.53	27.46
PGSC0003DMT400010280	Potato	cytosol	20.43	25.88
PGSC0003DMT400044866	Potato	extracellular	24.26	21.35
PGSC0003DMT400031324	Potato	cytosol	6.17	20.86
PGSC0003DMT400008944	Potato	nucleus	11.7	20.83
PGSC0003DMT400025900	Potato	nucleus	12.13	19.86
PGSC0003DMT400027411	Potato	nucleus	10.43	19.29
PGSC0003DMT400008213	Potato	nucleus	17.23	19.1
PGSC0003DMT400039802	Potato	nucleus	17.23	18.16
PGSC0003DMT400032256	Potato	nucleus	11.7	17.63
PGSC0003DMT400035478	Potato	nucleus, plastid	10.21	17.02
PGSC0003DMT400072501	Potato	nucleus	14.26	16.26
PGSC0003DMT400008583	Potato	nucleus	19.79	15.55
PGSC0003DMT400031418	Potato	extracellular, golgi	11.91	15.38
PGSC0003DMT400058431	Potato	nucleus	15.32	14.69
PGSC0003DMT400016249	Potato	nucleus	14.26	13.62

Protein Annotations

EntrezGene:102602365	Gene3D:3.30.70.330	MapMan:35.1	InterPro:DAZAP1_RRM2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1C632	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400023557	PGSC:PGSC0003DMG400023557	EnsemblPlants:PGSC0003DMT400060554	PFscan:PS50102	PANTHER:PTHR44291
PANTHER:PTHR44291:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295D6CF
RefSeq:XP_006346780.1	SEG:seg	:	:	:	:

Description

Heterogeneous nuclear ribonucleoprotein 27C [Source:PGSC_GENE;Acc:PGSC0003DMG400023557]

Coordinates

chr4:-:8816234..8820578

Molecular Weight (calculated)

50162.8 Da

IEP (calculated)

7.366

GRAVY (calculated)

-0.478

Length

470 amino acids

Sequence
(BLAST)

001: MESGKVFVGG ISWDTNDDRL REYFQAFGDV VEAVIMKDRI TGRARGFGFV VFADPSIAEK VVKEKHIIDG RTVEAKKAVP RDDQHVNRTN GSIQGSPGPA
101: RTRKIFVGGL ASSVTESDFK KYFDQFGTIT DVVVMYDHNT QRPRGFGFIT YDSEEAVDNV LFKTFHELNG KRVEVKRAVP KELSPGPTQS QLVGRYNHGM
201: NRVNNFLNVY AQGYSPSLMG NYGVGTEGRY SPISVGRNGY SLFGPVDYNM GTEIDSRLNS SYGGSGKFSS VLGYGRNLNS FHNENSNKYN VPVGHGSGRV
301: GNGPVLNSTG QNKWENDSLF HGTNFANTSM FVGSGSGNTG LSGVFGGLGT TWGTSPISGQ GGRNGSFSDD NITFSGGQNG FAGGAGYGQN ARSNADAESS
401: YAPTQGVHAN TFGDFYGTVS SSILEDSTWR ASSPELDSAG ALSYGLGSAD SLSYVGGYSV ANRSTRGIAA

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.