Factsheet for PGSC0003DMT400031418

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 3
plastid 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031324	Potato	cytosol	31.59	82.73
PGSC0003DMT400032256	Potato	nucleus	64.56	75.32
GSMUA_Achr5P09550_001	Banana	nucleus	29.4	28.76
GSMUA_Achr5P09540_001	Banana	nucleus	29.67	27.84
CDY55846	Canola	nucleus	29.4	26.68
AT3G15010.2	Thale cress	nucleus	28.57	25.74
CDY25867	Canola	nucleus	28.57	25.68
Bra038113.1-P	Field mustard	nucleus	28.85	25.36
CDY26001	Canola	nucleus	28.3	25.31
CDY24106	Canola	nucleus	28.3	24.94
Bra039664.1-P	Field mustard	nucleus	28.3	24.82
VIT_19s0014g01570.t01	Wine grape	nucleus	30.22	24.5
TraesCS3B01G250700.1	Wheat	golgi	29.12	24.09
TraesCS3A01G220400.1	Wheat	nucleus	29.12	24.09
EES03272	Sorghum	nucleus	29.4	24.04
HORVU3Hr1G053990.1	Barley	nucleus	29.12	24.04
Zm00001d011336_P002	Maize	nucleus	29.4	23.88
TraesCS3D01G232300.1	Wheat	nucleus	28.85	23.86
PGSC0003DMT400039802	Potato	nucleus	28.85	23.54
Zm00001d044469_P003	Maize	nucleus	28.85	23.49
Os01t0614500-01	Rice	nucleus	28.85	23.49
KRH26210	Soybean	nucleus	27.47	22.88
PGSC0003DMT400008213	Potato	nucleus	26.65	22.88
KRH55109	Soybean	nucleus	26.92	22.07
PGSC0003DMT400058431	Potato	nucleus	26.92	20.0
PGSC0003DMT400072501	Potato	nucleus	22.25	19.66
PGSC0003DMT400016249	Potato	nucleus	24.73	18.29
PGSC0003DMT400012372	Potato	nucleus	14.84	18.18
PGSC0003DMT400044868	Potato	nucleus	17.03	18.13
PGSC0003DMT400025900	Potato	nucleus	14.29	18.12
PGSC0003DMT400027411	Potato	nucleus	12.36	17.72
PGSC0003DMT400008944	Potato	nucleus	11.81	16.29
PGSC0003DMT400009762	Potato	nucleus	17.31	15.87
PGSC0003DMT400035478	Potato	nucleus, plastid	12.09	15.6
PGSC0003DMT400006638	Potato	nucleus	16.48	15.54
PGSC0003DMT400076643	Potato	nucleus	18.68	14.35
PGSC0003DMT400032811	Potato	nucleus	15.11	14.14
PGSC0003DMT400035000	Potato	nucleus	17.03	14.03
PGSC0003DMT400037271	Potato	nucleus	17.86	13.83
PGSC0003DMT400012369	Potato	nucleus	16.48	13.73
PGSC0003DMT400010280	Potato	cytosol	13.74	13.48
PGSC0003DMT400044195	Potato	nucleus	17.58	13.47
PGSC0003DMT400012586	Potato	nucleus	12.09	12.79
PGSC0003DMT400034757	Potato	nucleus	15.66	12.18
PGSC0003DMT400074192	Potato	nucleus	15.66	12.03
PGSC0003DMT400060554	Potato	nucleus	15.38	11.91
PGSC0003DMT400044866	Potato	extracellular	16.76	11.42
PGSC0003DMT400008583	Potato	nucleus	11.54	7.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400031418	EnsemblPlantsGene:PGSC0003DMG400012045	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44678	PANTHER:PTHR44678:SF2	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG400012045	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002959993	UniProt:M1AVM9	MapMan:35.1	:

Description

Heterogeneous nuclear ribonucleoprotein A1 [Source:PGSC_GENE;Acc:PGSC0003DMG400012045]

Coordinates

chr10:-:46855320..46857951

Molecular Weight (calculated)

41192.5 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.302

Length

364 amino acids

Sequence
(BLAST)

001: MSQNLGFVFT SKLKELSRIF LLKCLHFLNN AIELLLNFHL NKNNKQEMSL QNVSQTLSHD QINKIVEGIT ILLPGVLENV LSGTKTTSSH DGFTHHKLFI
101: GSLGIRTTSQ TLRQFFSAYG EIKDALVVRD KFGVSKEYGF VIFKNVRSML MALKEPYKTI DGKMTITKVA RSRIRDVEDE SLRTIYVSNV PYDMCPSKLL
201: EYFSSYGVME KGPFGFDKET GKSRGYAIFV YRTLVGAKTA IYEPNKCVDG HNLTCEMAIP KTMMKNPRVA PNLDFDFGPV QHDHYNNARS RFNGCSSRSE
301: VSQVGTQYAP YQGNGQMYAH KCDCILGLNH MGSGLYSNID QADYSIWASE FPRHRPLWFD GSSL

Best Arabidopsis Sequence Match ( AT3G15010.1 )
(BLAST)

001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY

Arabidopsis Description

UBA2CUBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.