Factsheet for PGSC0003DMT400034757

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012470.1.1	Tomato	nucleus	88.89	97.2
PGSC0003DMT400060554	Potato	nucleus	69.44	69.15
PGSC0003DMT400037271	Potato	nucleus	57.48	57.23
GSMUA_Achr10P...	Banana	nucleus	52.78	56.14
GSMUA_Achr10P...	Banana	nucleus	54.91	55.87
HORVU0Hr1G008280.1	Barley	nucleus	54.7	55.29
TraesCS4A01G150600.1	Wheat	nucleus	54.49	55.08
TraesCS4D01G152200.1	Wheat	nucleus	54.49	55.08
Os11t0637700-01	Rice	plasma membrane	54.7	54.82
TraesCSU01G068500.1	Wheat	nucleus	54.06	54.64
PGSC0003DMT400076643	Potato	nucleus	55.13	54.43
PGSC0003DMT400074192	Potato	nucleus	54.7	54.01
Os07t0584500-01	Rice	nucleus	53.21	52.75
Zm00001d019079_P001	Maize	cytosol	50.43	52.68
GSMUA_Achr6P10970_001	Banana	nucleus	55.98	52.4
Zm00001d007772_P001	Maize	nucleus	50.21	52.34
GSMUA_Achr4P33100_001	Banana	nucleus	49.15	52.04
TraesCS2B01G216600.2	Wheat	cytosol	52.35	52.02
TraesCS2D01G197500.2	Wheat	nucleus	52.14	51.91
EER98147	Sorghum	nucleus	50.21	51.88
EER96020	Sorghum	nucleus	50.21	51.65
EER97452	Sorghum	nucleus	51.71	51.38
Zm00001d019084_P002	Maize	nucleus	48.72	50.22
Zm00001d006704_P002	Maize	nucleus	51.5	49.79
TraesCS2A01G190400.1	Wheat	plastid	51.71	45.57
Zm00001d019086_P001	Maize	nucleus	51.07	44.92
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	50.64	43.81
OQU83904	Sorghum	nucleus	41.24	42.89
PGSC0003DMT400009762	Potato	nucleus	31.2	36.78
PGSC0003DMT400035000	Potato	nucleus	34.62	36.65
PGSC0003DMT400044195	Potato	nucleus	37.18	36.63
GSMUA_Achr3P02300_001	Banana	nucleus	52.56	36.23
PGSC0003DMT400044868	Potato	nucleus	25.64	35.09
PGSC0003DMT400012586	Potato	nucleus	25.64	34.88
PGSC0003DMT400012372	Potato	nucleus	20.73	32.66
PGSC0003DMT400006638	Potato	nucleus	26.92	32.64
PGSC0003DMT400032811	Potato	nucleus	25.64	30.85
PGSC0003DMT400012369	Potato	nucleus	26.71	28.6
PGSC0003DMT400010280	Potato	cytosol	21.58	27.22
PGSC0003DMT400008944	Potato	nucleus	13.03	23.11
PGSC0003DMT400044866	Potato	extracellular	25.64	22.47
PGSC0003DMT400031324	Potato	cytosol	6.2	20.86
PGSC0003DMT400008213	Potato	nucleus	17.73	19.58
PGSC0003DMT400025900	Potato	nucleus	11.54	18.82
PGSC0003DMT400035478	Potato	nucleus, plastid	11.11	18.44
PGSC0003DMT400027411	Potato	nucleus	9.83	18.11
PGSC0003DMT400032256	Potato	nucleus	11.97	17.95
PGSC0003DMT400039802	Potato	nucleus	15.81	16.59
PGSC0003DMT400008583	Potato	nucleus	21.15	16.56
PGSC0003DMT400072501	Potato	nucleus	14.53	16.5
PGSC0003DMT400031418	Potato	extracellular, golgi	12.18	15.66
PGSC0003DMT400058431	Potato	nucleus	14.74	14.08
PGSC0003DMT400016249	Potato	nucleus	13.89	13.21

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	InterPro:DAZAP1_RRM2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1B186	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400013354	PGSC:PGSC0003DMG400013354	EnsemblPlants:PGSC0003DMT400034757	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295098F	SEG:seg

Description

Heterogeneous nuclear ribonucleoprotein 27C [Source:PGSC_GENE;Acc:PGSC0003DMG400013354]

Coordinates

chr11:+:411075..415065

Molecular Weight (calculated)

49783.5 Da

IEP (calculated)

8.264

GRAVY (calculated)

-0.429

Length

468 amino acids

Sequence
(BLAST)

001: MEPGKLFVGG ISWDTNEDRL KEYFQAFGDV IEAVIMKDRI TGRARGFGFV VFADPSVAER VVKEKHIIDG RTVEAKKAVP RDDQHITRNN GSMQGSPGPA
101: RTKKIFVGGL ASSVTESDFK NYFDQFGTIT DVVVMYDHNT QRPRGFGFIT FDSEEAVDKV LYKTFHELNG KLVEVKRAVP KELSPSPARS PFNGQNYGLN
201: RVNNLLNAYT QGYVPSSIGN YGMRMEGRYS PLTAGRNGYS SFNPADFNLP TGIDSTLNLN YGGNGTFGSN YGRGFNSLYN GNSNRFSGPV GFAPGRVASS
301: SMLNSVGWNL WDNESLNYGT NSANSTDFVG SGSGAAGYGT LGGLGTIWGS SSISGQGGGN GSFGSGNIAN SGEAVGTGYG RNSGSNAVNT SPYSSAKDIP
401: AGAFGNLYGN TVGASFYEDS AWRSASPELD DSASFGYGLG NAESLGYVGG YSVANRSNKG KKLLICYF

Best Arabidopsis Sequence Match ( AT5G47620.5 )
(BLAST)

001: MEMESCKLFI GGISWETSED RLRDYFHSFG EVLEAVIMKD RATGRARGFG FVVFADPNVA ERVVLLKHII DGKIVEAKKA VPRDDHVVFN KSNSSLQGSP
101: GPSNSKKIFV GGLASSVTEA EFKKYFAQFG MITDVVVMYD HRTQRPRGFG FISYDSEEAV DKVLQKTFHE LNGKMVEVKL AVPKDMALNT MRNQMNVNSF
201: GTSRISSLLN EYTQGFSPSP ISGYGVKPEV RYSPAVGNRG GFSPFGHGYG IELNFEPNQT QNYGSGSSGG FGRPFSPGYA ASLGRFGSQM ESGGASVGNG
301: SVLNAAPKNH LWGNGGLGYM SNSPISRSSF SGNSGMSSLG SIGDNWGTVA RARSSYHGER GGVGLEAMRG VHVGGYSSGS SILEADSLYS DSMWLSLPAK
401: AEEGLGMGPL DFMSRGPAGY INRQPNGGIA A

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JYK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.