Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019079_P001 | Maize | cytosol | 91.63 | 92.86 |
| Zm00001d007772_P001 | Maize | nucleus | 89.21 | 90.2 |
| EER96020 | Sorghum | nucleus | 89.87 | 89.67 |
| EER98147 | Sorghum | nucleus | 89.43 | 89.62 |
| Os07t0584500-01 | Rice | nucleus | 79.07 | 76.06 |
| TraesCS2D01G197500.2 | Wheat | nucleus | 76.21 | 73.62 |
| TraesCS2B01G216600.2 | Wheat | cytosol | 75.99 | 73.25 |
| Zm00001d006704_P002 | Maize | nucleus | 77.75 | 72.93 |
| Zm00001d019086_P001 | Maize | nucleus | 82.6 | 70.49 |
| TraesCS2A01G190400.1 | Wheat | plastid | 76.65 | 65.54 |
| Zm00001d021950_P007 | Maize | endoplasmic reticulum, nucleus | 77.97 | 65.43 |
| GSMUA_Achr10P... | Banana | nucleus | 53.74 | 55.45 |
| KRH74025 | Soybean | nucleus | 56.83 | 54.32 |
| KRH14098 | Soybean | nucleus | 56.17 | 53.24 |
| GSMUA_Achr4P33100_001 | Banana | nucleus | 51.54 | 52.94 |
| VIT_12s0057g00480.t01 | Wine grape | nucleus | 55.29 | 52.51 |
| GSMUA_Achr10P... | Banana | nucleus | 53.08 | 52.39 |
| VIT_19s0090g01660.t01 | Wine grape | nucleus | 54.85 | 52.09 |
| PGSC0003DMT400037271 | Potato | nucleus | 53.74 | 51.91 |
| KRG98573 | Soybean | nucleus | 54.41 | 51.57 |
| KRH46297 | Soybean | nucleus | 53.96 | 51.15 |
| Solyc07g048030.2.1 | Tomato | nucleus | 48.9 | 50.8 |
| Solyc04g014820.2.1 | Tomato | cytosol | 29.96 | 50.75 |
| GSMUA_Achr6P10970_001 | Banana | nucleus | 55.73 | 50.6 |
| KRH73860 | Soybean | nucleus | 52.86 | 50.31 |
| Solyc10g006050.2.1 | Tomato | nucleus | 47.8 | 50.12 |
| PGSC0003DMT400076643 | Potato | nucleus | 52.2 | 50.0 |
| PGSC0003DMT400074192 | Potato | nucleus | 51.98 | 49.79 |
| KRH14284 | Soybean | nucleus | 51.54 | 48.95 |
| PGSC0003DMT400034757 | Potato | nucleus | 50.22 | 48.72 |
| Solyc12g014600.1.1 | Tomato | nucleus | 46.48 | 48.28 |
| Solyc12g006180.1.1 | Tomato | nucleus | 46.48 | 48.17 |
| Solyc11g012470.1.1 | Tomato | nucleus | 45.15 | 47.9 |
| CDY07975 | Canola | nucleus | 49.12 | 47.35 |
| CDX74030 | Canola | nucleus | 49.12 | 47.25 |
| Bra001267.1-P | Field mustard | nucleus | 48.68 | 46.92 |
| CDY66272 | Canola | nucleus | 50.44 | 46.83 |
| Bra040031.1-P | Field mustard | nucleus | 50.0 | 46.71 |
| CDY22136 | Canola | nucleus | 50.0 | 46.71 |
| CDY35966 | Canola | nucleus | 50.66 | 46.56 |
| Bra029681.1-P | Field mustard | nucleus | 51.32 | 46.51 |
| AT3G07810.2 | Thale cress | nucleus | 50.66 | 46.46 |
| PGSC0003DMT400060554 | Potato | nucleus | 47.58 | 45.96 |
| AT4G26650.1 | Thale cress | nucleus | 45.81 | 45.71 |
| CDX94301 | Canola | nucleus | 44.49 | 45.7 |
| CDX89316 | Canola | endoplasmic reticulum | 44.27 | 44.97 |
| CDY46690 | Canola | nucleus | 42.29 | 44.86 |
| CDY36753 | Canola | nucleus | 42.95 | 44.83 |
| Bra028973.1-P | Field mustard | nucleus | 42.73 | 44.8 |
| CDX92807 | Canola | nucleus | 44.05 | 44.44 |
| CDY11989 | Canola | nucleus | 42.29 | 44.44 |
| Bra026413.1-P | Field mustard | nucleus | 40.97 | 43.97 |
| CDY50131 | Canola | nucleus | 36.56 | 43.46 |
| Bra021062.1-P | Field mustard | nucleus | 37.44 | 43.37 |
| Bra019094.1-P | Field mustard | nucleus | 44.05 | 43.2 |
| CDY46689 | Canola | nucleus | 44.05 | 43.2 |
| CDX77783 | Canola | nucleus | 39.87 | 42.59 |
| CDY17719 | Canola | cytoskeleton, cytosol, nucleus | 38.77 | 42.41 |
| Bra017475.1-P | Field mustard | nucleus | 39.65 | 42.15 |
| CDY41059 | Canola | nucleus | 39.65 | 42.15 |
| Bra024928.1-P | Field mustard | nucleus | 38.99 | 42.14 |
| AT5G47620.4 | Thale cress | cytoskeleton, cytosol, nucleus | 41.63 | 41.72 |
| CDY58169 | Canola | cytosol, nucleus, plasma membrane | 37.44 | 41.36 |
| Bra022145.1-P | Field mustard | nucleus | 41.19 | 40.65 |
| AT5G55550.10 | Thale cress | nucleus | 43.83 | 39.25 |
| CDY28918 | Canola | mitochondrion | 41.41 | 38.84 |
| GSMUA_Achr3P02300_001 | Banana | nucleus | 54.85 | 36.67 |
| Zm00001d032739_P001 | Maize | nucleus | 35.24 | 36.12 |
| Zm00001d034200_P001 | Maize | nucleus | 13.22 | 35.09 |
| CDX75170 | Canola | extracellular | 12.56 | 34.97 |
| Zm00001d014058_P002 | Maize | plastid | 36.34 | 34.23 |
| CDY25957 | Canola | nucleus | 40.09 | 32.91 |
| Zm00001d030579_P001 | Maize | mitochondrion | 24.01 | 31.32 |
| Zm00001d034201_P001 | Maize | nucleus | 16.96 | 30.68 |
| CDY40554 | Canola | nucleus | 41.19 | 28.51 |
| Zm00001d016349_P002 | Maize | nucleus | 24.01 | 28.39 |
| Zm00001d018730_P001 | Maize | nucleus | 22.91 | 27.81 |
| Zm00001d052820_P001 | Maize | extracellular, mitochondrion, plasma membrane | 23.35 | 27.68 |
| Zm00001d007839_P001 | Maize | cytosol | 22.47 | 27.57 |
| Zm00001d036966_P001 | Maize | nucleus, plasma membrane | 24.67 | 27.12 |
| Zm00001d011885_P008 | Maize | cytosol | 21.15 | 26.67 |
| Zm00001d046190_P001 | Maize | extracellular | 24.45 | 26.55 |
| Zm00001d052212_P001 | Maize | nucleus | 8.59 | 24.22 |
| Zm00001d053572_P002 | Maize | cytosol | 24.89 | 20.58 |
| Zm00001d042641_P001 | Maize | nucleus | 13.0 | 20.0 |
| Zm00001d047753_P001 | Maize | cytosol, mitochondrion, nucleus | 11.45 | 18.64 |
| Zm00001d044469_P003 | Maize | nucleus | 18.28 | 18.57 |
| Zm00001d028714_P001 | Maize | cytosol, nucleus, plasma membrane | 12.11 | 18.52 |
| Zm00001d011336_P002 | Maize | nucleus | 18.06 | 18.3 |
| Zm00001d036789_P001 | Maize | cytosol, mitochondrion, nucleus | 11.01 | 17.92 |
| Zm00001d042133_P003 | Maize | cytosol | 15.64 | 17.84 |
| Zm00001d040344_P001 | Maize | extracellular, plasma membrane | 17.18 | 17.18 |
| Zm00001d012238_P003 | Maize | nucleus, plasma membrane, plastid | 12.78 | 17.06 |
| Zm00001d018103_P002 | Maize | plasma membrane | 11.67 | 16.67 |
| Zm00001d042042_P001 | Maize | nucleus | 12.11 | 16.18 |
| Zm00001d037209_P001 | Maize | plastid | 11.45 | 15.66 |
| Zm00001d017829_P002 | Maize | plastid | 11.23 | 14.78 |
| Zm00001d002141_P006 | Maize | nucleus | 16.3 | 14.2 |
| Zm00001d046716_P001 | Maize | nucleus | 11.23 | 14.17 |
| Zm00001d026397_P001 | Maize | nucleus, plasma membrane | 15.86 | 13.82 |
| Zm00001d051627_P002 | Maize | plastid | 10.35 | 12.77 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6HUZ4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM52112.1 | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44291 | PANTHER:PTHR44291:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00084233D8 | EnsemblPlantsGene:Zm00001d019084 | EnsemblPlants:Zm00001d019084_P002 | EnsemblPlants:Zm00001d019084_T002 | SEG:seg |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Coordinates
chr7:+:15693420..15695432
Molecular Weight (calculated)
48092.2 Da
IEP (calculated)
9.609
GRAVY (calculated)
-0.443
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGEEAGAME AADYGKLFVG GISWETSEDR LREYFGRFGE VTEAAIMRDR STGRARGFGF VVFTDAAVAE RVTMEKHMID GRMVEAKKAV PRDDHSIVSK
101: SNGRSTGSPG PGRTRKIFVG GLPSSITEAD FRRYFEQFGV ITDVVVMYDH NTQRPRGFGF ITYDSKKKAL HKSFHELNGK MVEVKKAVPK EQSPGPVARS
201: PVGVGQNYAA NRVHSFLNGF NQGYNPIPMG GYGMRVDGRY GFLSGARNGF SSFGPGYGMG MNVEGGMSGT FGATSGFISN SNGRQMGSYF NASSNRLGSP
301: IGYLGLNDVP GSMLGSMSRN VWGNGSLNYP SNPANMSAFA SPGNGGQVSL TGDNWGGLPS AHGIGNISGL GSGNLGRGAG DNNFGLPSGS YGRSNSTGTI
401: GEPFSAAGNT YDVNNADTYG SSSVYGGTVW RFTSSEVDMH SFGHDIGNVG PTIK
101: SNGRSTGSPG PGRTRKIFVG GLPSSITEAD FRRYFEQFGV ITDVVVMYDH NTQRPRGFGF ITYDSKKKAL HKSFHELNGK MVEVKKAVPK EQSPGPVARS
201: PVGVGQNYAA NRVHSFLNGF NQGYNPIPMG GYGMRVDGRY GFLSGARNGF SSFGPGYGMG MNVEGGMSGT FGATSGFISN SNGRQMGSYF NASSNRLGSP
301: IGYLGLNDVP GSMLGSMSRN VWGNGSLNYP SNPANMSAFA SPGNGGQVSL TGDNWGGLPS AHGIGNISGL GSGNLGRGAG DNNFGLPSGS YGRSNSTGTI
401: GEPFSAAGNT YDVNNADTYG SSSVYGGTVW RFTSSEVDMH SFGHDIGNVG PTIK
001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.