Factsheet for Bra001267.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74030	Canola	nucleus	99.58	99.36
CDY07975	Canola	nucleus	98.3	98.3
Bra040031.1-P	Field mustard	nucleus	89.38	86.63
AT3G07810.2	Thale cress	nucleus	88.32	84.04
Bra029681.1-P	Field mustard	nucleus	88.11	82.83
GSMUA_Achr10P...	Banana	nucleus	57.11	58.48
GSMUA_Achr10P...	Banana	nucleus	54.56	58.41
Os11t0637700-01	Rice	plasma membrane	55.2	55.67
TraesCS4A01G150600.1	Wheat	nucleus	54.56	55.51
HORVU0Hr1G008280.1	Barley	nucleus	54.56	55.51
TraesCS4D01G152200.1	Wheat	nucleus	54.35	55.29
TraesCSU01G068500.1	Wheat	nucleus	53.93	54.86
GSMUA_Achr6P10970_001	Banana	nucleus	57.54	54.2
GSMUA_Achr4P33100_001	Banana	nucleus	49.26	52.49
Zm00001d007772_P001	Maize	nucleus	48.2	50.56
Bra024928.1-P	Field mustard	nucleus	44.59	50.0
TraesCS2B01G216600.2	Wheat	cytosol	49.89	49.89
TraesCS2D01G197500.2	Wheat	nucleus	49.68	49.79
Os07t0584500-01	Rice	nucleus	49.47	49.36
Zm00001d019079_P001	Maize	cytosol	46.92	49.33
EER97452	Sorghum	nucleus	49.26	49.26
EER98147	Sorghum	nucleus	47.35	49.23
Bra028973.1-P	Field mustard	nucleus	45.22	49.19
Bra026413.1-P	Field mustard	nucleus	44.16	49.17
EER96020	Sorghum	nucleus	47.13	48.79
Bra017475.1-P	Field mustard	nucleus	44.16	48.71
Zm00001d019084_P002	Maize	nucleus	46.92	48.68
Bra019094.1-P	Field mustard	nucleus	47.13	47.95
Zm00001d006704_P002	Maize	nucleus	48.83	47.52
Bra021062.1-P	Field mustard	nucleus	38.0	45.66
Bra022145.1-P	Field mustard	nucleus	44.59	45.65
OQU83904	Sorghum	nucleus	42.89	44.89
TraesCS2A01G190400.1	Wheat	plastid	49.47	43.88
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	7.22	43.59
Zm00001d019086_P001	Maize	nucleus	48.2	42.67
Zm00001d021950_P007	Maize	endoplasmic reticulum, nucleus	48.62	42.33
Bra021850.1-P	Field mustard	nucleus	31.21	40.05
Bra010757.1-P	Field mustard	nucleus	32.48	40.05
Bra005496.1-P	Field mustard	nucleus	31.85	39.89
GSMUA_Achr3P02300_001	Banana	nucleus	57.11	39.62
Bra022938.1-P	Field mustard	nucleus	33.97	39.22
Bra039380.1-P	Field mustard	nucleus	26.96	35.08
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	24.84	32.14
Bra025568.1-P	Field mustard	nucleus	29.94	25.87
Bra017802.1-P	Field mustard	nucleus	21.02	24.26
Bra007096.1-P	Field mustard	nucleus	11.68	21.24
Bra012254.1-P	Field mustard	nucleus	10.62	20.75
Bra025852.1-P	Field mustard	nucleus	11.46	20.69
Bra016445.1-P	Field mustard	nucleus	11.25	20.54
Bra024547.1-P	Field mustard	nucleus	10.4	20.5
Bra012350.1-P	Field mustard	nucleus	10.83	20.48
Bra038113.1-P	Field mustard	nucleus	17.41	19.81
Bra003651.1-P	Field mustard	nucleus	11.25	19.56
Bra039664.1-P	Field mustard	nucleus	16.99	19.28
Bra004508.1-P	Field mustard	nucleus	12.1	18.27
Bra031385.1-P	Field mustard	nucleus	11.04	17.93
Bra040485.1-P	Field mustard	nucleus	12.31	17.79
Bra010203.1-P	Field mustard	nucleus	11.25	17.38
Bra014667.1-P	Field mustard	nucleus	11.04	17.05
Bra012321.1-P	Field mustard	nucleus	10.4	16.95
Bra031230.1-P	Field mustard	nucleus	10.83	16.61
Bra016954.1-P	Field mustard	nucleus	15.5	16.59
Bra007277.1-P	Field mustard	nucleus	15.71	16.48
Bra030265.1-P	Field mustard	nucleus	11.68	15.03
Bra001228.1-P	Field mustard	cytosol	11.46	14.92
Bra029612.1-P	Field mustard	nucleus	8.92	14.63
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	9.55	14.42

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra001267	EnsemblPlants:Bra001267.1	EnsemblPlants:Bra001267.1-P	InterPro:DAZAP1_RRM2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4CAN8	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44291	PANTHER:PTHR44291:SF2
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025404D3	SEG:seg

Description

AT3G07810 (E=3e-128) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative

Coordinates

chrA03:+:15577152..15579274

Molecular Weight (calculated)

48853.7 Da

IEP (calculated)

8.486

GRAVY (calculated)

-0.548

Length

471 amino acids

Sequence
(BLAST)

001: MQSDSGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPDVA ETVITEKHNI DGRLVEAKKA VPRDDQNTAT RSNSSSLQGS
101: PGGRTRKIFV GGLPSSITES DFKTYFEQFG TTTDVVVMYD HNTQRPRGFG FITYDSEEAV EKVLLKTFHE LNGKMVEVKR AVPKELSPSP ARSSPLGAGY
201: SYGVSRVNNL LNGYAQGFSP GGYGLRMDGR FSPIGAGRSG FASFGGSGYG QGLPTGFTGG SSFNGNGDYG RGMSPYYIGN TNRFGYEGGS GGGGNSSFFS
301: SNLWGNNGGR SYNNNAANSS SNTYMGGGST SGNNTLNGPF GNWGAPGGGN SGVGNENLNF GYGGNGESGF GLGGARNIGP PSKAAPSSSF SSASAGYDGA
401: GLAEFYGNGA VYSDPTWRSS APETEGPASF SYGIGGGGGG PSSDVSARSS SPGYVGSYSV NKRQPNRGIA T

Best Arabidopsis Sequence Match ( AT3G07810.1 )
(BLAST)

001: MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS
101: PGGPGRTRKI FVGGLPSSVT ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV KRAVPKELSP GPSRSPLGAG
201: YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301: GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP
401: GANKAAPSSS FSSASATNNT GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS YSVNKRQPNR GIAT

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JFN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.