Factsheet for Bra012254.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012964.1-P
Bra035933.1-P
Bra038436.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20880.1	Bra038436.1-P	AT1G31750.1	21798944
AT1G20880.1	Bra012964.1-P	AT5G61380.1	21798944
AT1G20880.1	Bra035933.1-P	AT5G61380.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01349	Canola	nucleus	98.34	98.34
Bra016445.1-P	Field mustard	nucleus	84.65	79.07
Bra025852.1-P	Field mustard	nucleus	85.06	78.54
AT1G20880.1	Thale cress	nucleus	76.76	67.52
KRH51553	Soybean	nucleus, plastid	69.71	58.74
KRH60871	Soybean	nucleus, plastid	69.29	58.39
VIT_18s0122g00660.t01	Wine grape	nucleus, plastid	66.81	56.49
Bra015741.1-P	Field mustard	nucleus, plastid, vacuole	62.66	48.4
Solyc02g082270.2.1	Tomato	nucleus	49.38	42.2
PGSC0003DMT400035478	Potato	nucleus, plastid	48.96	41.84
Bra035441.1-P	Field mustard	mitochondrion, nucleus, plastid	12.45	38.46
Bra024547.1-P	Field mustard	nucleus	36.93	37.24
Bra012350.1-P	Field mustard	nucleus	36.93	35.74
Bra007096.1-P	Field mustard	nucleus	36.1	33.59
Bra031385.1-P	Field mustard	nucleus	39.83	33.1
Bra003651.1-P	Field mustard	nucleus	36.93	32.84
Bra012321.1-P	Field mustard	nucleus	39.0	32.53
Bra010203.1-P	Field mustard	nucleus	39.42	31.15
Bra004508.1-P	Field mustard	nucleus	39.0	30.13
Bra040485.1-P	Field mustard	nucleus	39.42	29.14
Bra029612.1-P	Field mustard	nucleus	21.16	17.77
Bra031230.1-P	Field mustard	nucleus	20.75	16.29
Bra038113.1-P	Field mustard	nucleus	26.14	15.22
Bra039664.1-P	Field mustard	nucleus	26.14	15.18
Bra010757.1-P	Field mustard	nucleus	21.58	13.61
Bra001228.1-P	Field mustard	cytosol	19.92	13.26
Bra039380.1-P	Field mustard	nucleus	19.92	13.26
Bra021850.1-P	Field mustard	nucleus	19.5	12.81
Bra005496.1-P	Field mustard	nucleus	19.5	12.5
Bra022938.1-P	Field mustard	nucleus	21.16	12.5
Bra016954.1-P	Field mustard	nucleus	22.41	12.27
Bra021062.1-P	Field mustard	nucleus	19.92	12.24
Bra027860.1-P	Field mustard	cytosol, nucleus, peroxisome	18.26	12.09
Bra007277.1-P	Field mustard	nucleus	22.41	12.03
Bra014667.1-P	Field mustard	nucleus	14.94	11.8
Bra024928.1-P	Field mustard	nucleus	20.33	11.67
Bra017475.1-P	Field mustard	nucleus	20.33	11.48
Bra030265.1-P	Field mustard	nucleus	16.6	10.93
Bra022145.1-P	Field mustard	nucleus	20.33	10.65
Bra001267.1-P	Field mustard	nucleus	20.75	10.62
Bra040031.1-P	Field mustard	nucleus	20.75	10.29
Bra017802.1-P	Field mustard	nucleus	17.01	10.05
Bra025568.1-P	Field mustard	nucleus	22.41	9.91
Bra029681.1-P	Field mustard	nucleus	20.33	9.78
Bra028973.1-P	Field mustard	nucleus	16.6	9.24
Bra026413.1-P	Field mustard	nucleus	16.18	9.22
Bra019094.1-P	Field mustard	nucleus	17.43	9.07

Protein Annotations

EnsemblPlants:Bra012254.1	EnsemblPlants:Bra012254.1-P	EnsemblPlantsGene:Bra012254	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44828	PANTHER:PTHR44828:SF1	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002541583	UniProt:M4D6Z4	MapMan:35.1	:	:

Description

AT1G76460 (E=5e-093) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:+:9066350..9067885

Molecular Weight (calculated)

26462.0 Da

IEP (calculated)

9.188

GRAVY (calculated)

-0.476

Length

241 amino acids

Sequence
(BLAST)

001: MAYSHSPFGD TTFTKVFVGG LAWETQSGTL LRHFEPYGAI LEAVVIYDNN TGRSKGYGFV TFRDPEAARR ACVDPAPIID GRRANCNLAS LGRPRLPMQY
101: SVIPGRMRPA SPYVGGHPYQ QPVAYSYQQG VMYPYGATPY GPEYIYSQSH GLYGPYTAQQ QYLQVYGVPG AVNSPGYQYR QFSQNIPAGH NYTAVQGYSV
201: PGSHIQSPYP SVIAGPSPTQ SHIIVRTSQH MQRSSSDQTT G

Best Arabidopsis Sequence Match ( AT1G76460.1 )
(BLAST)

001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.