Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g115770.2.1 | |
| Solyc03g122180.2.1 | |
| Solyc06g063000.2.1 | |
| Solyc06g069690.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035478 | Potato | nucleus, plastid | 96.45 | 96.45 |
| VIT_18s0122g00660.t01 | Wine grape | nucleus, plastid | 55.32 | 54.74 |
| KRH60871 | Soybean | nucleus, plastid | 54.26 | 53.5 |
| CDY31508 | Canola | nucleus | 46.81 | 52.8 |
| KRH51553 | Soybean | nucleus, plastid | 53.55 | 52.8 |
| Bra025852.1-P | Field mustard | nucleus | 48.23 | 52.11 |
| CDX96615 | Canola | nucleus | 46.45 | 51.98 |
| CDY31859 | Canola | nucleus | 44.33 | 51.87 |
| CDY33653 | Canola | nucleus | 46.1 | 51.38 |
| CDY29496 | Canola | nucleus | 47.52 | 51.34 |
| Bra016445.1-P | Field mustard | nucleus | 46.81 | 51.16 |
| CDX88283 | Canola | nucleus | 50.71 | 51.07 |
| AT1G76460.1 | Thale cress | nucleus | 51.06 | 50.53 |
| CDY01349 | Canola | nucleus | 42.91 | 50.21 |
| AT1G20880.1 | Thale cress | nucleus | 48.23 | 49.63 |
| Bra012254.1-P | Field mustard | nucleus | 42.2 | 49.38 |
| Solyc04g082770.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 39.72 | 46.47 |
| CDX87594 | Canola | nucleus | 51.06 | 45.0 |
| Solyc11g044470.1.1 | Tomato | mitochondrion, nucleus, plastid | 34.4 | 37.16 |
| Bra015741.1-P | Field mustard | nucleus, plastid, vacuole | 40.43 | 36.54 |
| Solyc04g074310.2.1 | Tomato | nucleus | 36.52 | 35.15 |
| Solyc04g049920.2.1 | Tomato | nucleus | 28.72 | 33.61 |
| Solyc03g121710.2.1 | Tomato | nucleus | 18.09 | 18.96 |
| Solyc12g014210.1.1 | Tomato | nucleus | 19.5 | 16.42 |
| Solyc06g062740.1.1 | Tomato | cytosol | 11.35 | 16.24 |
| Solyc07g045240.2.1 | Tomato | nucleus | 17.73 | 14.58 |
| Solyc02g021560.2.1 | Tomato | nucleus | 21.99 | 14.39 |
| Solyc10g081330.1.1 | Tomato | nucleus | 19.15 | 12.95 |
| Solyc04g077520.2.1 | Tomato | nucleus | 14.54 | 12.02 |
| Solyc09g072790.2.1 | Tomato | nucleus | 16.67 | 11.93 |
| Solyc02g093340.2.1 | Tomato | nucleus | 16.31 | 11.83 |
| Solyc03g005680.2.1 | Tomato | nucleus | 17.73 | 11.71 |
| Solyc02g090910.2.1 | Tomato | nucleus | 15.6 | 11.7 |
| Solyc06g062730.1.1 | Tomato | nucleus | 14.89 | 11.44 |
| Solyc09g090520.2.1 | Tomato | nucleus | 19.15 | 11.37 |
| Solyc04g011560.2.1 | Tomato | nucleus | 18.79 | 11.28 |
| Solyc01g008970.2.1 | Tomato | nucleus | 14.89 | 11.17 |
| Solyc04g014820.2.1 | Tomato | cytosol | 9.93 | 10.45 |
| Solyc02g064540.1.1 | Tomato | nucleus | 13.12 | 10.0 |
| Solyc12g035280.1.1 | Tomato | cytosol, nucleus, plastid | 13.12 | 9.97 |
| Solyc11g012470.1.1 | Tomato | nucleus | 12.41 | 8.18 |
| Solyc07g048030.2.1 | Tomato | nucleus | 12.41 | 8.01 |
| Solyc12g006180.1.1 | Tomato | nucleus | 12.41 | 7.99 |
| Solyc10g006050.2.1 | Tomato | nucleus | 11.7 | 7.62 |
| Solyc12g014600.1.1 | Tomato | nucleus | 11.35 | 7.32 |
Protein Annotations
| EnsemblPlants:Solyc02g082270.2.1 | EnsemblPlantsGene:Solyc02g082270.2 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44828 | PANTHER:PTHR44828:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0002767D2D | UniProt:K4BA97 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2:+:45973477..45977943
Molecular Weight (calculated)
30597.1 Da
IEP (calculated)
9.318
GRAVY (calculated)
-0.487
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYQMSPGGS SSGGGSGSPF TGRGPYGVGD TTYTKVFVGG LAWETKSESL RSYFEQFGDI IEAVVITDKH TGRSKGYGFV TFHDPEAAWR ACTNPNPIID
101: GRRANCNLAS LGRPQGLLPY GRLRSSMPYL GNPQASRGMY MGSPYYQLPV PYSYQPGFSY PPYRFPAYGP DYVYPQMYGI PSTVGTNTLQ FGQLGAQPGS
201: PAYAYRGHLM TGPHMVQYQR PNASGAMTDN VPLMQLPYHS VKVLDYPISS GITMPSPRQP QTAVQARPPQ FTQSSGSDQM AG
101: GRRANCNLAS LGRPQGLLPY GRLRSSMPYL GNPQASRGMY MGSPYYQLPV PYSYQPGFSY PPYRFPAYGP DYVYPQMYGI PSTVGTNTLQ FGQLGAQPGS
201: PAYAYRGHLM TGPHMVQYQR PNASGAMTDN VPLMQLPYHS VKVLDYPISS GITMPSPRQP QTAVQARPPQ FTQSSGSDQM AG
001: MAYQPVPGSG FHYLNSPFGD TTFTKVFVGG LAWETQSETL RQHFEQYGEI LEAVVIADKN TGRSKGYGFV TFRDPEAARR ACADPTPIID GRRANCNLAS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
101: LGRPRPPLPY AVIPNMPGRL RPASPYIGNV QGPRGSLIGN YPYQQPLPYN YQQGVVYPYG VTAYGPEYMY SQSQGLYSPY MGQQYLQVYG VPGAVNSPVY
201: QYGQLSQTIP NGHGYTAVQG YSVPGSHILQ LGGPTVSTMT TSSMPALQAP YPSGIPGPAP VQSHIIVHSP QFMQSTASDQ TTSYS
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4I2E4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.