Factsheet for Solyc06g063000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc04g011560.2.1
Solyc07g066570.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	Solyc07g066570.2.1	AT1G16500.1	21798944
AT3G14100.1	Solyc04g011560.2.1	AT2G22090.2	12024044
AT3G14100.1	Solyc03g116320.2.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	99.04	99.04
Solyc03g122180.2.1	Tomato	nucleus	85.37	85.37
GSMUA_Achr6P11660_001	Banana	mitochondrion	81.3	80.14
AT3G14100.1	Thale cress	nucleus	81.53	79.63
GSMUA_Achr10P...	Banana	mitochondrion	80.1	78.59
Bra037962.1-P	Field mustard	nucleus	78.18	77.43
Bra030908.1-P	Field mustard	nucleus	77.7	77.33
CDY02486	Canola	nucleus	77.7	77.14
CDY51403	Canola	nucleus	77.7	77.14
CDY61476	Canola	nucleus	77.22	76.85
CDY33092	Canola	nucleus	78.18	76.71
Solyc07g042180.2.1	Tomato	nucleus	72.66	76.13
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	78.66	75.58
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	71.46	74.31
AT1G54080.2	Thale cress	nucleus	75.54	73.26
GSMUA_Achr11P...	Banana	nucleus	76.98	72.3
Os07t0615400-01	Rice	nucleus	72.42	70.73
TraesCS4B01G148600.1	Wheat	nucleus	73.86	69.21
Os11t0620100-01	Rice	nucleus	73.14	69.16
Zm00001d048824_P004	Maize	nucleus	73.86	68.9
Zm00001d026528_P001	Maize	plastid	36.21	68.64
TraesCS2D01G176700.1	Wheat	nucleus	69.54	68.08
TraesCS4D01G150600.2	Wheat	nucleus	73.14	67.93
EES08860	Sorghum	nucleus	71.7	67.8
TraesCS2A01G169100.1	Wheat	nucleus	69.3	67.52
TraesCS2B01G195400.1	Wheat	nucleus	69.3	67.37
TraesCS4A01G150000.1	Wheat	mitochondrion	71.7	66.74
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	79.38	66.73
HORVU4Hr1G033990.7	Barley	golgi, nucleus	68.82	65.38
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	22.3	63.7
HORVU2Hr1G031260.2	Barley	nucleus, plastid	69.78	58.55
Zm00001d026522_P001	Maize	nucleus	32.13	54.92
Solyc03g031720.2.1	Tomato	nucleus	25.66	26.42
Solyc07g064510.2.1	Tomato	plastid	25.9	26.34
Solyc01g108500.2.1	Tomato	nucleus	25.9	26.15
Solyc10g005260.2.1	Tomato	nucleus	25.18	25.55
Solyc10g050860.1.1	Tomato	nucleus	26.14	25.47
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	25.18	25.42
Solyc11g065880.1.1	Tomato	nucleus	23.74	23.74
Solyc04g079310.2.1	Tomato	nucleus	25.66	23.73
Solyc03g118800.2.1	Tomato	nucleus	16.55	18.96
Solyc01g107870.2.1	Tomato	extracellular	24.22	15.71
Solyc12g088720.1.1	Tomato	plastid	23.26	14.56
Solyc09g008620.1.1	Tomato	cytosol	20.62	14.21
Solyc10g085750.1.1	Tomato	nucleus	20.62	13.83
Solyc06g062680.1.1	Tomato	cytosol	10.55	8.29

Protein Annotations

EnsemblPlants:Solyc06g063000.2.1	EnsemblPlantsGene:Solyc06g063000.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
ncoils:Coil	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002766B3C	UniProt:K4C731	MapMan:16.9.3	:

Description

No Description!

Coordinates

chr6:+:39767747..39773238

Molecular Weight (calculated)

45539.9 Da

IEP (calculated)

7.863

GRAVY (calculated)

-0.413

Length

417 amino acids

Sequence
(BLAST)

001: MQNQRLKQQQ QQALMQQALL QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP TTCRSVFVGN IHPQVTEPLL QEVFSSTGLV EGCKLIRKEK SSYGFIHYYD
101: RRSAALAIVT LNGRHLFGQP IKVNWAFASG QREDTSSHFN IFVGDLSPEV TDAMLFACFS VYPGCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQSAINDL
201: TGKWLGSRQI RCNWATKGAN SNDDKQSSDA KSVVELTNGS SEDGKEAANS DAPENNPQYT TVYVGNIAPE VTQIDLHRYF HALGAGVIEE IRIQRDKGFG
301: FVRYNTHAEA ALAIQMGNTH SVLGGRQIKC SWGNKPTPPG TTSNPLPPPA PTPLGISATD LLAYERQLAM SKMGGVPGLM GQYPLKQGSM GMASGASQAI
401: YDGGFQNVAA QQLMYYQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.