Factsheet for Solyc10g050860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108500.2.1	Tomato	nucleus	79.91	82.81
VIT_03s0063g00850.t01	Wine grape	nucleus	66.82	69.08
GSMUA_Achr3P06840_001	Banana	nucleus	48.13	66.03
GSMUA_Achr9P15210_001	Banana	nucleus	47.2	64.74
KRH71168	Soybean	nucleus	63.55	63.11
KRH50251	Soybean	nucleus	63.32	62.88
Bra018813.1-P	Field mustard	mitochondrion, nucleus	56.54	62.05
GSMUA_Achr10P...	Banana	nucleus	45.33	61.78
TraesCS5A01G243500.1	Wheat	nucleus	49.3	61.7
TraesCS5B01G241400.1	Wheat	nucleus	49.3	61.7
TraesCS5D01G250100.1	Wheat	nucleus	49.07	61.4
CDY50959	Canola	nucleus	60.75	60.47
CDY29341	Canola	nucleus	59.11	60.38
CDY68866	Canola	nucleus	58.41	60.24
CDY16528	Canola	nucleus	59.58	60.14
CDY28101	Canola	nucleus	60.28	60.14
GSMUA_Achr6P10190_001	Banana	nucleus	43.93	60.06
CDY32840	Canola	nucleus	58.41	59.38
CDY22988	Canola	nucleus	57.94	59.05
CDX92304	Canola	nucleus	58.41	58.96
Bra040663.1-P	Field mustard	nucleus	51.17	58.87
AT3G19130.1	Thale cress	nucleus	59.81	58.85
CDX99265	Canola	nucleus	58.18	58.73
Bra022389.1-P	Field mustard	nucleus	58.41	58.69
CDX82310	Canola	nucleus	56.31	58.5
Bra001735.1-P	Field mustard	nucleus	56.31	58.5
CDY18570	Canola	nucleus	58.41	57.6
CDX95462	Canola	nucleus	57.94	57.14
Solyc04g079310.2.1	Tomato	nucleus	60.05	56.98
Os02t0567900-01	Rice	cytosol, nucleus	33.88	55.98
AT1G49600.3	Thale cress	nucleus	57.01	54.22
Bra037538.1-P	Field mustard	nucleus	50.93	54.09
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	53.04	52.42
KXG35789	Sorghum	nucleus	53.27	52.05
Zm00001d020748_P002	Maize	plasma membrane	52.57	51.96
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	50.93	51.42
Solyc03g031720.2.1	Tomato	nucleus	48.6	51.36
GSMUA_Achr3P01720_001	Banana	mitochondrion	48.13	51.12
Solyc10g005260.2.1	Tomato	nucleus	49.07	51.09
Os04t0449900-01	Rice	plastid	46.03	50.9
TraesCS6A01G204400.1	Wheat	mitochondrion	44.63	50.4
Solyc07g064510.2.1	Tomato	plastid	47.9	50.0
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	47.9	49.64
GSMUA_Achr6P09470_001	Banana	nucleus	16.59	48.3
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	49.77	48.3
Solyc11g065880.1.1	Tomato	nucleus	46.26	47.48
EES10898	Sorghum	nucleus	45.79	46.34
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	45.09	46.28
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	44.86	46.04
TraesCS2B01G335700.1	Wheat	plastid	45.09	45.95
TraesCS2A01G317700.2	Wheat	plastid	45.33	45.75
TraesCS2D01G315400.2	Wheat	plastid	45.33	45.75
Zm00001d050838_P001	Maize	plastid	45.09	44.88
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	44.39	44.5
EES05289	Sorghum	plastid	44.86	44.14
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	45.09	42.32
Zm00001d025551_P002	Maize	plastid	44.39	42.04
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	43.46	39.24
Bra014216.1-P	Field mustard	nucleus	51.87	38.81
Solyc06g063000.2.1	Tomato	nucleus	25.47	26.14
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	23.83	25.44
Solyc03g122180.2.1	Tomato	nucleus	24.53	25.18
Solyc07g042180.2.1	Tomato	nucleus	23.13	24.87
Solyc03g118800.2.1	Tomato	nucleus	15.19	17.86
Solyc01g107870.2.1	Tomato	extracellular	23.13	15.4
Solyc09g008620.1.1	Tomato	cytosol	20.56	14.55
Solyc12g088720.1.1	Tomato	plastid	22.43	14.41
Solyc10g085750.1.1	Tomato	nucleus	19.86	13.67
Solyc06g062680.1.1	Tomato	cytosol	11.92	9.6

Protein Annotations

EnsemblPlants:Solyc10g050860.1.1	EnsemblPlantsGene:Solyc10g050860.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000276A556	UniProt:K4D0P0	MapMan:16.9.4	:

Description

No Description!

Coordinates

chr10:-:50973190..50980832

Molecular Weight (calculated)

47333.8 Da

IEP (calculated)

5.652

GRAVY (calculated)

-0.696

Length

428 amino acids

Sequence
(BLAST)

001: MNGDMNQQQQ QQQLQQQQQQ QWMAMQQYQQ QWMAMQQYPP AAAMVMQQQM MYGQQYMPYY HQQHQQMIQI QQNASEDNRT IWIGDLQQWM DEGYLHTCFA
101: QAGEVISVKV IRNKQTGQSE RYGFIEFNTH EAAEKVLQSY NGTMMPNAEQ PFRLNWSAFS SGEKRADVGA GAGSGSDLSI FVGDLASDVT DTMLRDTFSS
201: RYPSVKGAKV VIDSNTGRSK GYGFVRFDDE SERSRAMTEM NGIYCSSRAM RIGVATPKKP SPMQQYFSQA VILAGGHASN GAATQTSQTD SDLSNTTVFV
301: GGLDSEVTDE ELRQSFSQFG NVVSVKIPAG KGCGFVQFSE RSAAEDAIEK LNGTVIGAQT VRLSWGRNPA NKQFRTDSGS QWNGGYYGRQ NYGGYGYGAS
401: QSQDSMYGAG AAHGASSNGY GNHEQSVS

Best Arabidopsis Sequence Match ( AT3G19130.1 )
(BLAST)

001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN

Arabidopsis Description

RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.