Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES10898 | Sorghum | nucleus | 86.73 | 92.67 |
| Os04t0449900-01 | Rice | plastid | 76.11 | 88.89 |
| TraesCS2B01G335700.1 | Wheat | plastid | 80.97 | 87.14 |
| TraesCS2D01G315400.2 | Wheat | plastid | 81.42 | 86.79 |
| TraesCS2A01G317700.2 | Wheat | plastid | 80.97 | 86.32 |
| Zm00001d050838_P001 | Maize | plastid | 73.45 | 77.21 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 70.35 | 74.47 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 73.45 | 70.04 |
| GSMUA_Achr10P... | Banana | nucleus | 44.91 | 64.65 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 44.03 | 63.58 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 58.19 | 62.03 |
| Zm00001d020748_P002 | Maize | plasma membrane | 58.63 | 61.2 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 19.69 | 60.54 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 50.44 | 56.58 |
| Bra027446.1-P | Field mustard | cytosol | 39.6 | 55.94 |
| PGSC0003DMT400020621 | Potato | nucleus | 48.89 | 55.81 |
| KRH05723 | Soybean | nucleus | 49.56 | 54.24 |
| KRH61258 | Soybean | nucleus | 48.89 | 54.03 |
| Zm00001d009512_P001 | Maize | mitochondrion | 15.71 | 53.79 |
| KRH15315 | Soybean | nucleus | 49.34 | 52.47 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 16.37 | 52.11 |
| KRH51956 | Soybean | nucleus | 47.35 | 52.07 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 48.01 | 51.91 |
| Solyc04g079310.2.1 | Tomato | nucleus | 50.88 | 51.0 |
| Zm00001d010739_P001 | Maize | mitochondrion | 13.5 | 49.19 |
| CDY06734 | Canola | mitochondrion | 33.19 | 49.18 |
| AT1G47500.1 | Thale cress | nucleus | 46.46 | 48.39 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 44.03 | 48.07 |
| CDY52067 | Canola | nucleus | 44.47 | 47.97 |
| CDX95176 | Canola | nucleus | 44.47 | 47.97 |
| Solyc01g108500.2.1 | Tomato | nucleus | 43.58 | 47.7 |
| AT1G47490.1 | Thale cress | nucleus | 45.13 | 47.22 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 40.49 | 46.92 |
| PGSC0003DMT400066648 | Potato | nucleus | 43.36 | 46.67 |
| KRH71168 | Soybean | nucleus | 43.36 | 45.48 |
| KRH50251 | Soybean | nucleus | 43.14 | 45.24 |
| CDY32840 | Canola | nucleus | 41.81 | 44.89 |
| CDY29341 | Canola | nucleus | 41.59 | 44.87 |
| CDY16528 | Canola | nucleus | 42.04 | 44.81 |
| Zm00001d013812_P001 | Maize | nucleus | 40.04 | 44.58 |
| CDY28101 | Canola | nucleus | 42.26 | 44.52 |
| Solyc10g050860.1.1 | Tomato | nucleus | 42.04 | 44.39 |
| Bra040663.1-P | Field mustard | nucleus | 36.5 | 44.35 |
| CDY50959 | Canola | nucleus | 42.04 | 44.19 |
| CDY68866 | Canola | nucleus | 40.04 | 43.61 |
| Zm00001d026346_P002 | Maize | extracellular | 40.71 | 42.99 |
| CDX99265 | Canola | nucleus | 40.04 | 42.69 |
| CDX92304 | Canola | nucleus | 39.6 | 42.22 |
| AT3G19130.1 | Thale cress | nucleus | 40.49 | 42.07 |
| Bra022389.1-P | Field mustard | nucleus | 39.6 | 42.02 |
| CDY22988 | Canola | nucleus | 38.72 | 41.67 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 41.81 | 41.45 |
| Zm00001d002244_P003 | Maize | nucleus | 40.71 | 41.07 |
| CDX95462 | Canola | nucleus | 39.38 | 41.01 |
| CDY18570 | Canola | nucleus | 39.16 | 40.78 |
| CDX82310 | Canola | nucleus | 37.17 | 40.78 |
| Bra001735.1-P | Field mustard | nucleus | 37.17 | 40.78 |
| Zm00001d021149_P001 | Maize | cytosol | 14.82 | 40.61 |
| AT1G49600.3 | Thale cress | nucleus | 39.82 | 40.0 |
| Zm00001d007929_P002 | Maize | nucleus | 30.75 | 38.72 |
| Zm00001d021633_P006 | Maize | nucleus | 39.82 | 38.71 |
| Bra037538.1-P | Field mustard | nucleus | 34.07 | 38.21 |
| Zm00001d006496_P004 | Maize | nucleus | 40.71 | 33.89 |
| Zm00001d016252_P001 | Maize | nucleus | 25.89 | 31.12 |
| Bra014216.1-P | Field mustard | nucleus | 37.17 | 29.37 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 14.6 | 24.63 |
| Zm00001d026528_P001 | Maize | plastid | 11.95 | 24.55 |
| Zm00001d027869_P002 | Maize | nucleus | 37.17 | 22.02 |
| Zm00001d048824_P004 | Maize | nucleus | 20.8 | 21.03 |
| Zm00001d031525_P004 | Maize | nucleus | 21.24 | 20.6 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 15.04 | 19.05 |
| Zm00001d032807_P001 | Maize | nucleus | 14.82 | 18.66 |
| Zm00001d049759_P003 | Maize | nucleus | 18.36 | 18.12 |
| Zm00001d026522_P001 | Maize | nucleus | 9.73 | 18.03 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 19.91 | 13.8 |
| Zm00001d046487_P001 | Maize | cytosol | 19.47 | 13.69 |
| Zm00001d019824_P004 | Maize | cytosol | 19.47 | 13.41 |
| Zm00001d005276_P007 | Maize | cytosol | 19.25 | 13.3 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 18.81 | 13.04 |
| Zm00001d047790_P001 | Maize | plastid | 19.25 | 11.84 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | UniProt:A0A1D6J7R1 | ProteinID:AQK43963.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0008431DB8 | EnsemblPlantsGene:Zm00001d025551 | EnsemblPlants:Zm00001d025551_P002 | EnsemblPlants:Zm00001d025551_T002 | SEG:seg |
Description
Polyadenylate-binding protein RBP47B
Coordinates
chr10:+:122019302..122026030
Molecular Weight (calculated)
49907.1 Da
IEP (calculated)
8.337
GRAVY (calculated)
-0.448
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MQMAATTTES QAAVPPQHPH AHPHAPPQHA HPHHHMPQPR WVVIPYPPPP PMVAAPPPPP QFAKHFAAGP PPPPQAGAGR RTPTPPSSGS GGNGCEENKT
101: IWVGDLQYWM DENYLHNCFG PSGEVVTIKV IRNRQTGQSE GYGFVEFFSH ASAEKALQNF TGHVMPNTDR PFKLNWASYS MGEKRSEVAS DHSIFVGDLA
201: ADVTDEMLLE LFSSKYRSVK GAKVIIDANT GRSRGYGFVR FGDDNDKSHA MSEMNGVYCS TRPIRIGPAT PRRSSGSYSY PQVQRLMVPS CFYDLFTELD
301: DYCTQVILAP RLLVIQMVIL LTERFVVYVG GLDPNVSEDE LRKAFAKYDL ASVKIPLGKQ CGFVQFVSRT DAEEALQGLN GSLIGKQAVR LSWVRSPSHK
401: QSRGDSVNRR NNMYYGTPFY GGYGYASPVP HPNMYAAAYG TYPLYGNQQL VS
101: IWVGDLQYWM DENYLHNCFG PSGEVVTIKV IRNRQTGQSE GYGFVEFFSH ASAEKALQNF TGHVMPNTDR PFKLNWASYS MGEKRSEVAS DHSIFVGDLA
201: ADVTDEMLLE LFSSKYRSVK GAKVIIDANT GRSRGYGFVR FGDDNDKSHA MSEMNGVYCS TRPIRIGPAT PRRSSGSYSY PQVQRLMVPS CFYDLFTELD
301: DYCTQVILAP RLLVIQMVIL LTERFVVYVG GLDPNVSEDE LRKAFAKYDL ASVKIPLGKQ CGFVQFVSRT DAEEALQGLN GSLIGKQAVR LSWVRSPSHK
401: QSRGDSVNRR NNMYYGTPFY GGYGYASPVP HPNMYAAAYG TYPLYGNQQL VS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.