CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15315	Soybean	nucleus	96.13	93.41
KRH61258	Soybean	nucleus	82.81	83.62
KRH51956	Soybean	nucleus	81.11	81.51
VIT_18s0001g11080.t01	Wine grape	nucleus	77.72	76.79
PGSC0003DMT400020621	Potato	nucleus	71.19	74.24
GSMUA_Achr9P15210_001	Banana	nucleus	55.93	74.04
GSMUA_Achr3P06840_001	Banana	nucleus	54.48	72.12
GSMUA_Achr10P...	Banana	nucleus	53.75	70.7
TraesCS5B01G241400.1	Wheat	nucleus	58.35	70.47
TraesCS5A01G243500.1	Wheat	nucleus	58.35	70.47
TraesCS5D01G250100.1	Wheat	nucleus	58.11	70.18
GSMUA_Achr6P10190_001	Banana	nucleus	52.78	69.65
Bra027446.1-P	Field mustard	cytosol	52.3	67.5
Solyc04g079310.2.1	Tomato	nucleus	72.4	66.3
Os02t0567900-01	Rice	cytosol, nucleus	40.19	64.09
KXG35789	Sorghum	nucleus	66.34	62.56
Zm00001d020748_P002	Maize	plasma membrane	65.38	62.36
CDY06734	Canola	mitochondrion	45.28	61.31
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	64.16	61.2
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	62.47	60.85
TraesCS6A01G204400.1	Wheat	mitochondrion	55.45	60.42
AT1G47490.1	Thale cress	nucleus	62.47	59.72
AT1G47500.1	Thale cress	nucleus	61.99	58.99
CDY52067	Canola	nucleus	59.81	58.95
Os04t0449900-01	Rice	plastid	54.96	58.66
GSMUA_Achr3P01720_001	Banana	mitochondrion	57.14	58.56
CDX95176	Canola	nucleus	59.32	58.47
KRH71168	Soybean	nucleus	60.05	57.54
KRH50251	Soybean	nucleus	59.81	57.31
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	61.02	57.14
GSMUA_Achr6P09470_001	Banana	nucleus	20.1	56.46
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	56.9	56.35
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	56.17	55.64
EES10898	Sorghum	nucleus	55.93	54.61
TraesCS2B01G335700.1	Wheat	plastid	54.96	54.05
TraesCS2D01G315400.2	Wheat	plastid	55.45	54.01
TraesCS2A01G317700.2	Wheat	plastid	55.45	54.01
EES05289	Sorghum	plastid	55.45	52.64
KRH02082	Soybean	nucleus	51.09	52.49
KRH51075	Soybean	endoplasmic reticulum	50.36	52.39
Zm00001d050838_P001	Maize	plastid	54.48	52.33
KRH20867	Soybean	nucleus	51.82	52.32
KRH11417	Soybean	nucleus	51.82	52.07
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	56.66	51.32
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	52.06	50.35
Zm00001d025551_P002	Maize	plastid	54.24	49.56
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	54.96	47.89
KRH23136	Soybean	cytosol	47.46	46.78
KRH29709	Soybean	cytosol	44.55	45.89
KRH24702	Soybean	nucleus	43.1	44.39
KRH10201	Soybean	mitochondrion, nucleus, plastid	29.06	40.82
KRH06218	Soybean	nucleus	25.42	25.24
KRH47641	Soybean	nucleus	25.67	25.12
KRH61952	Soybean	mitochondrion	25.18	24.47
KRH02581	Soybean	mitochondrion	24.46	24.46
KRH19347	Soybean	mitochondrion, nucleus	24.21	24.39
KRH52613	Soybean	nucleus	25.67	24.37
KRH19986	Soybean	cytosol	20.82	17.37
KRH32613	Soybean	cytosol	19.85	16.77
KRH27525	Soybean	nucleus	14.53	16.48
KRH36396	Soybean	endoplasmic reticulum	14.53	16.44
KRH70233	Soybean	cytosol	23.49	15.42
KRH61326	Soybean	cytosol, endoplasmic reticulum	22.76	14.92
KRH52023	Soybean	cytosol, endoplasmic reticulum	22.76	14.92
KRG91724	Soybean	cytosol	23.49	14.88
KRH15385	Soybean	nucleus	23.24	14.72
KRH67800	Soybean	cytosol	22.52	14.72
KRH50336	Soybean	cytosol	22.76	14.44
KRH05656	Soybean	endoplasmic reticulum, nucleus	22.76	14.37
KRH70673	Soybean	nucleus	22.28	14.2
KRH08608	Soybean	endoplasmic reticulum	22.76	14.11
KRG96088	Soybean	cytosol	21.55	13.99

Protein Annotations

EntrezGene:100801446	MapMan:16.9.4	Gene3D:3.30.70.330	EMBL:ACUP02010776	EnsemblPlantsGene:GLYMA_17G244800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MXR5	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH05723	ProteinID:KRH05723	ProteinID:KRH05723.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0001962602	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:40025998..40030195

Molecular Weight (calculated)

45284.7 Da

IEP (calculated)

7.078

GRAVY (calculated)

-0.596

Length

413 amino acids

Sequence
(BLAST)

001: MQQSNGSDST TTMEQSAPPP PRQSPAVARP QQWVPMQYPA AAAMVMPHHM LPPQHYAPPP YVPYHHQYAA QPQHQHQNGS GGENKTIWIG DLHHWMDENY
101: LHRCFASTGE ISSIKVIRNK QTGLSEGYGF VEFYSHATAE KVLQNYAGIL MPNAEQPFRL NWATFSTGDK GSDNVPDLSI FVGDLAADVT DSLLHETFAS
201: VYPSVKAAKV VFDANTGRSK GYGFVRFGDD NERTQAMTQM NGVYCSSRPM RIGAATPRKS SGHQQGGLSN GTANQSEADS TNTTIFVGGL DPNVSDEDLR
301: QPFSQYGEIV SVKIPVGKGC GFVQFANRNN AEEALQKLNG TTIGKQTVRL SWGRNPANKQ FRMDFGSPWT GAYYGAPMYD GYGYALPPRH DPSIYAAAYG
401: AYPLYGGHQQ QVS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.