CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22760.1	KRH16959	AT3G49580.1	21798944
AT1G22760.1	KRH53667	AT3G49580.1	21798944
AT1G22760.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08608	Soybean	endoplasmic reticulum	83.78	79.13
KRG91724	Soybean	cytosol	72.5	69.94
VIT_18s0001g02490.t01	Wine grape	plastid	65.98	62.97
PGSC0003DMT400064531	Potato	cytosol	48.49	57.33
GSMUA_Achr5P24940_001	Banana	plastid	57.71	54.5
KRH15385	Soybean	nucleus	55.48	53.53
KRH70673	Soybean	nucleus	54.69	53.09
KRH50336	Soybean	cytosol	54.85	53.0
KRH05656	Soybean	endoplasmic reticulum, nucleus	54.85	52.75
KRH52023	Soybean	cytosol, endoplasmic reticulum	52.15	52.06
KRH61326	Soybean	cytosol, endoplasmic reticulum	51.83	51.75
Bra016371.1-P	Field mustard	plastid	45.63	48.24
CDY41472	Canola	cytosol, plastid	47.69	46.8
AT1G22760.1	Thale cress	nucleus, plastid	48.81	46.52
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.06	45.68
Bra003915.1-P	Field mustard	cytosol	46.9	45.52
CDX96344	Canola	plastid	49.44	45.47
Bra016118.1-P	Field mustard	plastid	49.44	45.47
CDX72826	Canola	plastid	49.28	45.32
CDY36684	Canola	plastid	47.69	45.11
AT1G71770.1	Thale cress	cytosol, plastid	48.17	44.43
CDY37935	Canola	nucleus	45.63	44.09
Bra007984.1-P	Field mustard	plastid	43.4	43.75
CDY03685	Canola	nucleus	44.52	43.55
KRH32613	Soybean	cytosol	32.91	42.33
KRH19986	Soybean	cytosol	32.27	41.01
KRH67800	Soybean	cytosol	38.95	38.77
KRG96088	Soybean	cytosol	38.47	38.05
KRH36396	Soybean	endoplasmic reticulum	14.47	24.93
KRH27525	Soybean	nucleus	14.31	24.73
KRH61258	Soybean	nucleus	15.9	24.45
KRH24702	Soybean	nucleus	15.58	24.44
KRH29709	Soybean	cytosol	15.42	24.19
KRH10201	Soybean	mitochondrion, nucleus, plastid	11.13	23.81
KRH05723	Soybean	nucleus	15.42	23.49
KRH51956	Soybean	nucleus	15.26	23.36
KRH20867	Soybean	nucleus	15.1	23.23
KRH23136	Soybean	cytosol	15.42	23.15
KRH11417	Soybean	nucleus	15.1	23.11
KRH71168	Soybean	nucleus	15.58	22.74
KRH51075	Soybean	endoplasmic reticulum	14.31	22.67
KRH02082	Soybean	nucleus	14.47	22.64
KRH15315	Soybean	nucleus	15.1	22.35
KRH50251	Soybean	nucleus	14.94	21.81
KRH19347	Soybean	mitochondrion, nucleus	13.83	21.22
KRH06218	Soybean	nucleus	13.67	20.67
KRH02581	Soybean	mitochondrion	13.51	20.58
KRH61952	Soybean	mitochondrion	13.83	20.47
KRH52613	Soybean	nucleus	13.99	20.23
KRH47641	Soybean	nucleus	13.51	20.14

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100798998	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02000756	EnsemblPlantsGene:GLYMA_02G077400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	UniProt:I1JDA2	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
EnsemblPlants:KRH70233	ProteinID:KRH70233	ProteinID:KRH70233.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361
SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI00023BF08B	:

Description

hypothetical protein

Coordinates

chr2:+:6704171..6708527

Molecular Weight (calculated)

69627.8 Da

IEP (calculated)

6.867

GRAVY (calculated)

-0.390

Length

629 amino acids

Sequence
(BLAST)

001: MAAAMVPAGA LNGMQSGNAS LYVGDLERNV DEAQLFQLFA RVGPIFSIRV CRDETNRSLG YAYVNFVNPQ DAANAMEHLN FTPLNGKSIR VMFSNRDPSI
101: RKSGYANVFI KNLDISIDNK TLHDTFAAFG FVLSSKVAVD SIGQSKGYGF VQFDNEESAQ NAIKELNGML INDKKVYVGL FVNRQERAQV DGSPKFTNVY
201: VKNFSETYTD EDLEQLFSTY GTITSAVVMK DTDGKSRCFG FVNFESPDSA VAAVERLNGT TVNDDKVLYV GRAQRKAERE AELKARFELE RIRKYEKYHG
301: TNLYVKNLDY NINDDKLKEL FSEFGTITSC KVMLEPNGRS KGYGFVAFSA PRNANRALHE MNGKMIGRRP LYVAVAQRKE ERKALLEAQF SQMHALYAIT
401: HLPTGIPVYH PGAPRHGPQA LHYGQGAPSL VAPQPTGYGF QQQLLPGMHP GVAPNFIMPY HRQRQVPPRL RNLHRNQMLH LNSSQGFGYM GNGQNGMDPS
501: VVPHGIVAPM MPLPFDGSGI SAAPTYNQHP GGSLSNTFAS ALASATPENQ HLMLAEHLYP LVDEITKNHH QTEKVTGMLL EMDQSEVIHL TESPEDLKIK
601: VFEAMQALGE AAPDSEEVGD QLGSVSLKE

Best Arabidopsis Sequence Match ( AT1G71770.2 )
(BLAST)

001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE

Arabidopsis Description

PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.