CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10201	Soybean	mitochondrion, nucleus, plastid	65.87	93.88
KRH24702	Soybean	nucleus	76.13	79.55
KRH29709	Soybean	cytosol	75.42	78.8
VIT_06s0004g02040.t01	Wine grape	nucleus	79.0	74.38
Solyc11g065880.1.1	Tomato	nucleus	71.6	71.94
PGSC0003DMT400018998	Potato	nucleus	71.36	71.53
Os03t0174100-02	Rice	nucleus	68.02	68.51
HORVU4Hr1G075700.5	Barley	nucleus	67.3	67.79
TraesCS4A01G014200.1	Wheat	nucleus	67.06	67.55
AT5G19350.1	Thale cress	cytosol	68.5	67.53
EER95414	Sorghum	nucleus	66.59	67.23
GSMUA_Achr8P31320_001	Banana	nucleus	63.72	66.75
CDY13992	Canola	nucleus	65.87	65.87
Bra002230.1-P	Field mustard	nucleus	64.92	64.92
CDX92537	Canola	nucleus	64.92	64.92
CDX70874	Canola	cytosol, nucleus, peroxisome	65.39	63.72
CDX88893	Canola	cytosol, nucleus, peroxisome	65.16	63.49
Bra006502.1-P	Field mustard	nucleus	64.92	63.26
TraesCS4B01G289600.1	Wheat	nucleus	67.06	61.22
TraesCS4D01G288600.1	Wheat	nucleus	66.59	61.05
KRH51075	Soybean	endoplasmic reticulum	47.73	50.38
KRH02082	Soybean	nucleus	47.97	50.0
KRH20867	Soybean	nucleus	48.69	49.88
KRH11417	Soybean	nucleus	48.21	49.15
KRH61258	Soybean	nucleus	46.78	47.92
KRH05723	Soybean	nucleus	46.78	47.46
KRH51956	Soybean	nucleus	45.58	46.47
KRH15315	Soybean	nucleus	46.78	46.12
KRH71168	Soybean	nucleus	46.3	45.01
KRH50251	Soybean	nucleus	46.06	44.78
Zm00001d027869_P002	Maize	nucleus	54.42	29.88
KRH61952	Soybean	mitochondrion	25.06	24.71
KRH52613	Soybean	nucleus	25.3	24.37
KRH02581	Soybean	mitochondrion	23.15	23.49
KRH47641	Soybean	nucleus	23.15	22.99
KRH19347	Soybean	mitochondrion, nucleus	22.43	22.93
KRH06218	Soybean	nucleus	22.67	22.84
KRH27525	Soybean	nucleus	14.8	17.03
KRH36396	Soybean	endoplasmic reticulum	14.8	16.99
KRH50336	Soybean	cytosol	26.25	16.9
KRH70673	Soybean	nucleus	26.01	16.82
KRH15385	Soybean	nucleus	26.01	16.72
KRH05656	Soybean	endoplasmic reticulum, nucleus	25.78	16.51
KRH52023	Soybean	cytosol, endoplasmic reticulum	24.82	16.51
KRH61326	Soybean	cytosol, endoplasmic reticulum	24.58	16.35
KRH32613	Soybean	cytosol	18.85	16.16
KRH19986	Soybean	cytosol	18.62	15.76
KRH70233	Soybean	cytosol	23.15	15.42
KRG91724	Soybean	cytosol	23.87	15.34
KRH08608	Soybean	endoplasmic reticulum	24.34	15.32
KRH67800	Soybean	cytosol	22.91	15.19
KRG96088	Soybean	cytosol	22.91	15.09

Protein Annotations

EntrezGene:100799421	MapMan:16.9.4	Gene3D:3.30.70.330	EMBL:ACUP02008457	EnsemblPlantsGene:GLYMA_13G340200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1M508	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH23136	ProteinID:KRH23136	ProteinID:KRH23136.1	ProteinID:KRH23137.1	ProteinID:KRH23138.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001962605	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:43217675..43223251

Molecular Weight (calculated)

46278.3 Da

IEP (calculated)

5.258

GRAVY (calculated)

-0.433

Length

419 amino acids

Sequence
(BLAST)

001: MASYQQASTI EEVRTLWIGD LQYWVDEGYL SHCFGHTGEV ISIKIIRNKL TGQPEGYGFV EFVSHAAAER VLQTYNGTQM PATDQTFRLN WASFGIGERR
101: PDAAPEHSIF VGDLAPDVTD YLLQETFRAH YPSVRGAKVV TDPNTARSKG YGFVKFSDEN ERNRAMTEMN GVYCSTRPMR ISAATPKKTT GAYAAPAAPV
201: PKPVYPVPAY TSPVVQVQPP DYDVNNTTIF VGNLDLNVSE EELKQNSLQF GEIVSVKIQP GKGFGFVQFG TRASAEEAIQ KMQGKMIGQQ VVRISWGRTL
301: TARQDLPGGW GPQMDPNQWS AYYGYGQGYE AYAYGPAHDP SLYAYGAYPG YAQYPQQVEG AQDLSGMSVP TMEQREELYD PLAMPDVDKL NAAYLSVHGS
401: AILGRSLWQK TCSSSLQQA

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.