Factsheet for Bra002230.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92537	Canola	nucleus	98.33	98.33
AT5G19350.1	Thale cress	cytosol	86.63	85.41
Bra006502.1-P	Field mustard	nucleus	87.59	85.35
KRH29709	Soybean	cytosol	62.77	65.59
KRH23136	Soybean	cytosol	64.92	64.92
EER95414	Sorghum	nucleus	63.96	64.58
HORVU4Hr1G075700.5	Barley	nucleus	63.96	64.42
KRH24702	Soybean	nucleus	61.58	64.34
Solyc11g065880.1.1	Tomato	nucleus	63.96	64.27
PGSC0003DMT400018998	Potato	nucleus	63.96	64.11
TraesCS4A01G014200.1	Wheat	nucleus	63.48	63.94
VIT_06s0004g02040.t01	Wine grape	nucleus	67.78	63.82
Os03t0174100-02	Rice	nucleus	62.77	63.22
GSMUA_Achr8P31320_001	Banana	nucleus	59.9	62.75
KRH10201	Soybean	mitochondrion, nucleus, plastid	42.48	60.54
TraesCS4B01G289600.1	Wheat	nucleus	63.48	57.95
TraesCS4D01G288600.1	Wheat	nucleus	63.01	57.77
Bra031774.1-P	Field mustard	nucleus	45.58	48.48
Bra027446.1-P	Field mustard	cytosol	36.99	48.44
Bra019078.1-P	Field mustard	nucleus	45.11	45.87
Bra026387.1-P	Field mustard	nucleus	42.0	44.78
Bra002947.1-P	Field mustard	nucleus	41.77	44.19
Bra010418.1-P	Field mustard	nucleus	39.86	44.18
Bra018813.1-P	Field mustard	mitochondrion, nucleus	40.81	43.85
Bra001735.1-P	Field mustard	nucleus	39.62	40.29
Bra022389.1-P	Field mustard	nucleus	40.33	39.67
Bra040663.1-P	Field mustard	nucleus	34.61	38.98
Bra037538.1-P	Field mustard	nucleus	35.8	37.22
Zm00001d027869_P002	Maize	nucleus	52.03	28.57
Bra014216.1-P	Field mustard	nucleus	35.8	26.22
Bra030985.1-P	Field mustard	mitochondrion, nucleus	22.91	22.97
Bra037962.1-P	Field mustard	nucleus	22.67	22.57
Bra030908.1-P	Field mustard	nucleus	22.43	22.43
Bra034301.1-P	Field mustard	mitochondrion	5.73	21.62
Bra011488.1-P	Field mustard	cytosol, plastid	25.78	17.62
Bra034603.1-P	Field mustard	cytosol, plastid	26.01	17.61
Bra013104.1-P	Field mustard	cytosol	25.54	17.37
Bra037217.1-P	Field mustard	nucleus	15.51	17.06
Bra039603.1-P	Field mustard	nucleus	14.8	17.03
Bra016371.1-P	Field mustard	plastid	22.67	15.97
Bra032172.1-P	Field mustard	cytosol	23.87	15.53
Bra015220.1-P	Field mustard	cytosol	21.24	15.4
Bra018797.1-P	Field mustard	cytosol	23.39	15.01
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	22.2	14.86
Bra007984.1-P	Field mustard	plastid	21.24	14.26
Bra022413.1-P	Field mustard	cytosol	14.8	13.9
Bra003915.1-P	Field mustard	cytosol	21.48	13.89
Bra016118.1-P	Field mustard	plastid	22.2	13.6
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	16.23	13.03
Bra039841.1-P	Field mustard	cytosol	4.53	8.92

Protein Annotations

EnsemblPlants:Bra002230.1	EnsemblPlants:Bra002230.1-P	EnsemblPlantsGene:Bra002230	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545188	UniProt:M4CDE9	MapMan:16.9.4	:

Description

AT5G19350 (E=3e-169) | RNA-binding protein 45 (RBP45), putative

Coordinates

chrA10:-:10764504..10766856

Molecular Weight (calculated)

45893.4 Da

IEP (calculated)

4.801

GRAVY (calculated)

-0.455

Length

419 amino acids

Sequence
(BLAST)

001: MMTMMPPQPQ GYHHPQTLEE VRTLWIGDLQ YWVDENYLSS CFSQTGELVS VKVIRNKITG QPEGYGFIEF ISHAAAERTL QTYNGTPMPG TEINFRLNWA
101: SFGSGQKVDP GTDHSIFVGD LAPDVTDYLL QETFRVHYSS VRGAKVVTDP STGRSKGYGF VKFAEESERN RAMAEMNGLY CSTRPMRISA ATPKKTVGLQ
201: QPYAAKAAYP VPAPSAVAAA APAYVAQPAQ VIAPENDITC TTVSVADLDP NVTEEELKNA FSPLGEVIYV NIPETKGYGY VQFKTRTSAE EAMQNMQGHV
301: IGQQAVRISW SKNPGQDGYV TQADPNQWGG YYGYGQGYDA YAYGTAQDPS VYAYGGYGYP QYPQQGEGTQ EVTNSAAEQD LYDPMATPDV DKLNAGYFSV
401: HASAILGRLS WHRTSPLAS

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.