Factsheet for Bra003915.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	99.54	99.54
Bra016118.1-P	Field mustard	plastid	86.42	81.87
AT1G71770.1	Thale cress	cytosol, plastid	79.32	75.37
Bra007984.1-P	Field mustard	plastid	69.6	72.28
Bra016371.1-P	Field mustard	plastid	63.12	68.74
PGSC0003DMT400064531	Potato	cytosol	42.28	51.5
VIT_18s0001g02490.t01	Wine grape	plastid	51.54	50.68
Bra013104.1-P	Field mustard	cytosol	47.69	50.16
Bra034603.1-P	Field mustard	cytosol, plastid	47.84	50.08
KRG91724	Soybean	cytosol	49.85	49.54
Bra011488.1-P	Field mustard	cytosol, plastid	46.45	49.1
KRH08608	Soybean	endoplasmic reticulum	48.92	47.6
Bra018797.1-P	Field mustard	cytosol	47.84	47.47
GSMUA_Achr5P24940_001	Banana	plastid	48.77	47.45
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	45.37	46.96
KRH70233	Soybean	cytosol	45.52	46.9
Bra032172.1-P	Field mustard	cytosol	46.6	46.89
Bra015220.1-P	Field mustard	cytosol	39.97	44.81
Bra022413.1-P	Field mustard	cytosol	27.16	39.46
Bra034301.1-P	Field mustard	mitochondrion	6.64	38.74
Bra039841.1-P	Field mustard	cytosol	10.65	32.39
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	24.54	30.46
Bra039603.1-P	Field mustard	nucleus	14.51	25.82
Bra037217.1-P	Field mustard	nucleus	14.97	25.46
Bra027446.1-P	Field mustard	cytosol	11.88	24.06
Bra002947.1-P	Field mustard	nucleus	13.43	21.97
Bra019078.1-P	Field mustard	nucleus	13.73	21.6
Bra002230.1-P	Field mustard	nucleus	13.89	21.48
Bra010418.1-P	Field mustard	nucleus	12.04	20.63
Bra018813.1-P	Field mustard	mitochondrion, nucleus	12.35	20.51
Bra031774.1-P	Field mustard	nucleus	12.35	20.3
Bra006502.1-P	Field mustard	nucleus	13.43	20.23
Bra030908.1-P	Field mustard	nucleus	12.96	20.05
Bra037962.1-P	Field mustard	nucleus	12.96	19.95
Bra001735.1-P	Field mustard	nucleus	12.5	19.66
Bra030985.1-P	Field mustard	mitochondrion, nucleus	12.65	19.62
Bra026387.1-P	Field mustard	nucleus	11.73	19.34
Bra022389.1-P	Field mustard	nucleus	12.65	19.25
Bra040663.1-P	Field mustard	nucleus	10.49	18.28
Bra037538.1-P	Field mustard	nucleus	10.8	17.37
Bra014216.1-P	Field mustard	nucleus	10.65	12.06

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra003915	EnsemblPlants:Bra003915.1	EnsemblPlants:Bra003915.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
UniProt:M4CI82	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000254187B	SEG:seg	:	:

Description

AT1G71770 (E=5e-263) PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5); RNA binding / poly(A) binding / translation initiation factor

Coordinates

chrA07:+:15724410..15727013

Molecular Weight (calculated)

71281.2 Da

IEP (calculated)

8.600

GRAVY (calculated)

-0.455

Length

648 amino acids

Sequence
(BLAST)

001: MVDQVIPNQP AVTVASPPHA TQVAAVAAAA AEAFVTHPNS SLYVGDLDQT VNEAHLLDLF NQVAPVQTVR VCRDLTRRSL GYAYVNFANP DDAMRAMDIL
101: NYTPIKDRPI RIMRSNRDPS TRLSGKGNVF IKNLDLTIDN KALYDTFSSF GTILSCKVAM DSTGKSRGHG FVQYEKEETA QAAIDKLNGM LLNDKQVYVG
201: PFVRRQDRTR ESGAVPRFTN VYVKNLPKEI TDDELKKTFG KYGEISSAVV VKDESGNSRC FGFVNFESPE AAAVAVEKMN GISLGEDVLY VGRAQKKAER
301: GEELRRKYEQ ERLEKSYGTN LYVKNFDDGV NDEKLKEMFA EYGDVTSSKV MTNPEGLSRG FGFVAYSSPE EALKAMNEMN GKMIGRKPLY VSFAQRKEER
401: KTRLQTMFSM RPNAPMAGYP TGGPAAGPHH QMYMGQNGQG MVPSQPMGYG YQLQFMPGVR PGAGPANFMM PYPLQRPNQP GPRFGFRRGA PNMQQHFQQQ
501: PQMMQHNANS GMRYMGGPGN RMNGVEAAAP QGIMDASAIS HNASQNPLRP PLLPISKLTS ALALASPANH SQILGEQLYP LVEKQEPVHV AKVTGMLLEM
601: DQAEILHLLE SPEALKAKVS MALDVLRLSA NPSAVSSVDD QFAPSSTE

Best Arabidopsis Sequence Match ( AT1G71770.2 )
(BLAST)

001: MAAAVASGIA PTTAMVDQVI PNQPTVAAAA PPPFPAVSQV AAVAAAAAAA EALQTHPNSS LYVGDLDPSV NESHLLDLFN QVAPVHNLRV CRDLTHRSLG
101: YAYVNFANPE DASRAMESLN YAPIRDRPIR IMLSNRDPST RLSGKGNVFI KNLDASIDNK ALYETFSSFG TILSCKVAMD VVGRSKGYGF VQFEKEETAQ
201: AAIDKLNGML LNDKQVFVGH FVRRQDRARS ESGAVPSFTN VYVKNLPKEI TDDELKKTFG KYGDISSAVV MKDQSGNSRS FGFVNFVSPE AAAVAVEKMN
301: GISLGEDVLY VGRAQKKSDR EEELRRKFEQ ERISRFEKLQ GSNLYLKNLD DSVNDEKLKE MFSEYGNVTS CKVMMNSQGL SRGFGFVAYS NPEEALLAMK
401: EMNGKMIGRK PLYVALAQRK EERQAHLQSL FTQIRSPGTM SPVPSPMSGF HHHPPGGPMS GPHHPMFIGH NGQGLVPSQP MGYGYQVQFM PGMRPGAGPP
501: NFMMPFPLQR QTQPGPRVGF RRGANNMQQQ FQQQQMLQQN ASRFMGGAGN RRNGMEASAP QGIIPLPLNA SANSHNAPQR SHKPTPLTIS KLASDLALAS
601: PDKHPRMLGD HLYPLVEQQE PANAAKVTGM LLEMDQAEIL HLLESPEALK AKVSEALDVL RRSADPAAVS SVDDQFALSS SE

Arabidopsis Description

PAB5Polyadenylate-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q05196]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.