Factsheet for Bra011488.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 4
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004795.1-P
Bra032775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	Bra004795.1-P	AT2G43970.1	21798944
AT4G34110.1	Bra032775.1-P	AT4G14270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75397	Canola	nucleus, plastid	97.23	96.75
Bra034603.1-P	Field mustard	cytosol, plastid	89.56	88.69
AT4G34110.1	Thale cress	cytosol	87.28	85.06
Bra013104.1-P	Field mustard	cytosol	80.42	80.03
Bra015220.1-P	Field mustard	cytosol	72.43	76.82
KRH70673	Soybean	nucleus	74.23	70.22
KRH50336	Soybean	cytosol	74.23	69.89
Bra039841.1-P	Field mustard	cytosol	23.82	68.54
Bra018797.1-P	Field mustard	cytosol	72.59	68.15
Solyc01g107870.2.1	Tomato	extracellular	70.8	67.5
PGSC0003DMT400066245	Potato	extracellular	70.8	67.5
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	63.62	63.83
GSMUA_Achr9P00990_001	Banana	cytosol	66.23	62.37
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	65.91	61.96
GSMUA_AchrUn_...	Banana	cytosol	65.91	61.96
GSMUA_Achr4P09890_001	Banana	cytosol	65.74	61.81
TraesCS7D01G287900.1	Wheat	cytosol	64.27	61.76
TraesCS2D01G358000.1	Wheat	cytosol	66.72	61.6
TraesCS2A01G359000.1	Wheat	cytosol	66.72	61.5
Os09t0115400-01	Rice	nucleus	66.39	61.48
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	66.07	61.36
TraesCS2B01G378400.1	Wheat	nucleus	66.56	61.35
Zm00001d025801_P005	Maize	cytosol, plastid	65.09	61.2
Os04t0504800-01	Rice	plasma membrane	65.58	61.0
TraesCS5B01G159400.1	Wheat	cytosol	64.76	60.98
EES12460	Sorghum	plastid	65.91	60.84
TraesCS5A01G161800.2	Wheat	nucleus	64.6	60.83
TraesCS5D01G167000.1	Wheat	nucleus, unclear	64.6	60.83
KXG35258	Sorghum	cytosol	64.76	60.52
TraesCS7A01G288700.1	Wheat	nucleus	65.09	60.27
Zm00001d019824_P004	Maize	cytosol	64.27	60.06
GSMUA_Achr4P20270_001	Banana	cytosol	62.81	59.88
Zm00001d005276_P007	Maize	cytosol	63.78	59.79
Bra032172.1-P	Field mustard	cytosol	62.64	59.63
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	60.69	59.42
HORVU5Hr1G050560.1	Barley	plastid	64.76	56.55
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	65.09	55.73
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	70.64	55.02
TraesCS7B01G182800.3	Wheat	cytosol	60.52	54.96
Bra016371.1-P	Field mustard	plastid	49.76	51.26
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	53.67	50.77
Bra007984.1-P	Field mustard	plastid	48.12	47.28
Bra022413.1-P	Field mustard	cytosol	33.93	46.64
Bra003915.1-P	Field mustard	cytosol	49.1	46.45
Bra016118.1-P	Field mustard	plastid	51.55	46.2
GSMUA_Achr7P05430_001	Banana	nucleus	66.23	44.91
Bra034301.1-P	Field mustard	mitochondrion	7.5	41.44
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	28.06	32.95
Bra027446.1-P	Field mustard	cytosol	14.68	28.12
Bra037217.1-P	Field mustard	nucleus	16.97	27.3
Bra039603.1-P	Field mustard	nucleus	16.15	27.2
Bra002230.1-P	Field mustard	nucleus	17.62	25.78
Bra002947.1-P	Field mustard	nucleus	16.15	25.0
Bra006502.1-P	Field mustard	nucleus	17.46	24.88
Bra031774.1-P	Field mustard	nucleus	15.66	24.37
Bra019078.1-P	Field mustard	nucleus	16.15	24.03
Bra018813.1-P	Field mustard	mitochondrion, nucleus	14.85	23.33
Bra030985.1-P	Field mustard	mitochondrion, nucleus	15.82	23.21
Bra030908.1-P	Field mustard	nucleus	15.82	23.15
Bra037962.1-P	Field mustard	nucleus	15.82	23.04
Bra010418.1-P	Field mustard	nucleus	14.03	22.75
Bra026387.1-P	Field mustard	nucleus	13.7	21.37
Bra001735.1-P	Field mustard	nucleus	14.36	21.36
Bra022389.1-P	Field mustard	nucleus	14.36	20.66
Bra040663.1-P	Field mustard	nucleus	12.07	19.89
Bra037538.1-P	Field mustard	nucleus	12.4	18.86
Bra014216.1-P	Field mustard	nucleus	12.23	13.11

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra011488	EnsemblPlants:Bra011488.1	EnsemblPlants:Bra011488.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M4D4T3
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI0002545AAF	SEG:seg	:	:	:

Description

AT4G34110 (E=2e-264) PAB2, PABP2, ATPAB2 | PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor

Coordinates

chrA01:-:1964418..1967994

Molecular Weight (calculated)

67111.8 Da

IEP (calculated)

6.802

GRAVY (calculated)

-0.482

Length

613 amino acids

Sequence
(BLAST)

001: MAQVQTTVAP ATHFGTTSLY VGDLDLNVTD SQLFEAFSQM GQVVSVRVCR DSATRRSLGY GYVNFTNPPD AARAIQELNY IPLYGKPIRV MYSHRDPSVR
101: ISGAGNIFIK NLDQSIDHKA LHDTFSTFGN IVSCKVAVDA SGQSKGYGFV QYADEESAQK AIEKLNGMLL NDKQVYVGPF LRKQERDSTA NKTKFTNVYV
201: KNLAESTTDD DLKSAFAEYG EITSAVVMKD GEGGKSKGFG FVNFENADDA AKAVESLNGK MFDDKEWYVG RAQKKSERET ELRVRREESL REAAERFQSS
301: NLYVKNLDSS VSDETLKEMF SPFGTVTSCK VMCDPSGISK GSGFVAFSTP EEATEAMSQM SGKMVEGKPL YVAIAQRKED RRVRLQAQFS QVRPVAMPPS
401: AGPRMPMFPP GGPGIGQQMF YGQAPPNMIP PQPGYGFQQQ LVPGMRPGGR GHVPNYFMPM VQQQQRPGGG GRRPGGIQQS QHQVPMMQQH QMHPRGRMLR
501: YSQGRGSGGD VAPYDMGNNN TMPIGALASN LANASPEQQR MMLGENLYPL VEQLEAESAA KVTGMLLEMD QTEVLHLLES PEALKDKVAE AMDVLRSVAA
601: GGAAEQLASL NLS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.