Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034603.1-P | Field mustard | cytosol, plastid | 87.92 | 89.34 |
| CDY62723 | Canola | cytosol | 87.6 | 89.3 |
| CDY51957 | Canola | cytosol, plastid | 87.76 | 89.18 |
| CDX69025 | Canola | nucleus, plastid | 85.37 | 87.89 |
| CDX75397 | Canola | nucleus, plastid | 85.85 | 87.66 |
| Bra011488.1-P | Field mustard | cytosol, plastid | 85.06 | 87.28 |
| KRH70673 | Soybean | nucleus | 74.4 | 72.22 |
| KRH50336 | Soybean | cytosol | 74.56 | 72.04 |
| PGSC0003DMT400066245 | Potato | extracellular | 71.86 | 70.3 |
| Solyc01g107870.2.1 | Tomato | extracellular | 71.7 | 70.14 |
| AT1G49760.1 | Thale cress | cytosol | 72.34 | 67.81 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 62.8 | 64.65 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 66.45 | 64.21 |
| GSMUA_AchrUn_... | Banana | cytosol | 65.82 | 63.5 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 65.66 | 63.34 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 66.45 | 63.33 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 65.34 | 63.04 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 66.14 | 62.65 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 66.14 | 62.56 |
| Os09t0115400-01 | Rice | nucleus | 65.82 | 62.54 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 64.71 | 62.42 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 65.98 | 62.41 |
| EES12460 | Sorghum | plastid | 65.82 | 62.35 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 63.12 | 62.23 |
| Os04t0504800-01 | Rice | plasma membrane | 65.18 | 62.22 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 64.07 | 61.9 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 63.91 | 61.75 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 63.75 | 61.6 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 62.96 | 61.59 |
| KXG35258 | Sorghum | cytosol | 63.91 | 61.28 |
| Zm00001d005276_P007 | Maize | cytosol | 63.27 | 60.86 |
| Zm00001d019824_P004 | Maize | cytosol | 63.43 | 60.82 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 63.75 | 60.57 |
| AT2G23350.1 | Thale cress | nucleus | 63.12 | 59.97 |
| HORVU5Hr1G050560.1 | Barley | plastid | 64.07 | 57.41 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 71.38 | 57.05 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 64.07 | 56.28 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 59.46 | 55.41 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 53.26 | 51.7 |
| AT1G34140.1 | Thale cress | nucleus | 31.96 | 49.39 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 51.67 | 49.24 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 51.51 | 47.51 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 66.45 | 46.24 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 39.11 | 40.39 |
| AT3G16380.1 | Thale cress | nucleus | 30.05 | 35.2 |
| AT2G18510.1 | Thale cress | nucleus | 16.53 | 28.65 |
| AT5G54900.1 | Thale cress | nucleus | 15.42 | 25.06 |
| AT4G27000.1 | Thale cress | nucleus | 16.53 | 25.06 |
| AT5G19350.1 | Thale cress | cytosol | 16.85 | 24.94 |
| AT1G11650.2 | Thale cress | nucleus | 15.74 | 24.44 |
| AT1G47500.1 | Thale cress | nucleus | 16.85 | 24.42 |
| AT1G47490.1 | Thale cress | nucleus | 16.69 | 24.31 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 15.42 | 23.15 |
| AT3G14100.1 | Thale cress | nucleus | 15.58 | 22.95 |
| AT3G19130.1 | Thale cress | nucleus | 15.74 | 22.76 |
| AT1G54080.2 | Thale cress | nucleus | 15.42 | 22.56 |
| AT1G49600.3 | Thale cress | nucleus | 15.26 | 21.33 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EntrezGene:829557 | UniProt:A0A178UWB3 | ProteinID:AEE86325.1 |
| ArrayExpress:AT4G34110 | EnsemblPlantsGene:AT4G34110 | RefSeq:AT4G34110 | TAIR:AT4G34110 | RefSeq:AT4G34110-TAIR-G | EnsemblPlants:AT4G34110.1 |
| TAIR:AT4G34110.1 | EMBL:AY080718 | EMBL:BT002354 | ProteinID:CAA17561.1 | ProteinID:CAB80128.1 | ncoils:Coil |
| GO:GO:0000184 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006417 |
| GO:GO:0006446 | GO:GO:0006950 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0016032 | GO:GO:0019538 |
| GO:GO:0060211 | GO:GO:1900151 | InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 |
| EMBL:L19418 | RefSeq:NP_195137.5 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO98148.1 | UniProt:P42731 | Symbol:PAB2 |
| InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00961 |
| PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI000000BD7E | SEG:seg | : | : | : |
Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
Coordinates
chr4:+:16336291..16340314
Molecular Weight (calculated)
68676.5 Da
IEP (calculated)
8.477
GRAVY (calculated)
-0.508
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.