CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES08246
EES15258
EES16897

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	EES08246	AT2G43970.1	21798944
AT4G34110.1	EES15258	AT2G43970.1	21798944
AT4G34110.1	EES16897	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005276_P007	Maize	cytosol	95.88	96.18
Zm00001d019824_P004	Maize	cytosol	94.82	94.82
Os09t0115400-01	Rice	nucleus	84.45	83.69
TraesCS5B01G159400.1	Wheat	cytosol	81.86	82.49
TraesCS5D01G167000.1	Wheat	nucleus, unclear	81.71	82.33
TraesCS5A01G161800.2	Wheat	nucleus	81.4	82.03
HORVU5Hr1G050560.1	Barley	plastid	81.4	76.07
VIT_18s0001g10170.t01	Wine grape	cytosol	69.21	70.94
KRH15385	Soybean	nucleus	68.29	68.71
GSMUA_Achr4P20270_001	Banana	cytosol	67.23	68.58
KRH50336	Soybean	cytosol	67.99	68.51
CDY67364	Canola	nucleus	30.49	68.26
KRH70673	Soybean	nucleus	67.38	68.21
VIT_07s0031g00210.t01	Wine grape	cytosol	67.99	68.2
KRH05656	Soybean	endoplasmic reticulum, nucleus	67.53	67.74
Bra013104.1-P	Field mustard	cytosol	62.04	66.07
CDX89664	Canola	cytosol	61.74	65.96
CDX71223	Canola	cytosol	63.72	65.52
KRH52023	Soybean	cytosol, endoplasmic reticulum	62.35	64.92
CDY62723	Canola	cytosol	60.98	64.83
Bra011488.1-P	Field mustard	cytosol, plastid	60.52	64.76
Bra034603.1-P	Field mustard	cytosol, plastid	60.98	64.62
CDY54068	Canola	cytosol	64.18	64.47
CDY51957	Canola	cytosol, plastid	60.82	64.46
KRH61326	Soybean	cytosol, endoplasmic reticulum	61.89	64.44
CDX69025	Canola	nucleus, plastid	59.91	64.32
CDY51045	Canola	cytosol	64.02	64.32
Bra018797.1-P	Field mustard	cytosol	64.02	64.32
EES12460	Sorghum	plastid	65.09	64.31
CDX75397	Canola	nucleus, plastid	60.37	64.29
AT4G34110.1	Thale cress	cytosol	61.28	63.91
AT1G49760.1	Thale cress	cytosol	65.24	63.79
CDY36634	Canola	nucleus	62.65	63.33
Bra015220.1-P	Field mustard	cytosol	55.79	63.32
CDY67365	Canola	plastid	27.59	61.99
PGSC0003DMT400012508	Potato	nucleus	11.43	60.48
CDX79296	Canola	plastid	16.46	59.02
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	67.68	56.42
GSMUA_Achr7P05430_001	Banana	nucleus	68.45	49.67
EER89984	Sorghum	plastid	44.66	46.43
Bra022413.1-P	Field mustard	cytosol	30.18	44.39
CDX92325	Canola	nucleus	19.21	39.13
KXG40160	Sorghum	nucleus	39.02	35.51
CDX91689	Canola	nucleus	15.4	33.11
EER94133	Sorghum	nucleus	15.09	27.89
KXG27152	Sorghum	nucleus	14.63	22.12
OQU91463	Sorghum	nucleus	13.72	22.0
EER95414	Sorghum	nucleus	13.87	21.93
EER95718	Sorghum	nucleus	11.74	21.27
KXG35789	Sorghum	nucleus	13.72	20.55
EES15356	Sorghum	nucleus	13.87	20.36
EES10898	Sorghum	nucleus	13.11	20.33
EES08860	Sorghum	nucleus	13.26	19.73
EES05289	Sorghum	plastid	12.96	19.54
KXG24662	Sorghum	nucleus	13.57	19.52
Solyc06g062680.1.1	Tomato	cytosol	15.55	19.21
KXG36337	Sorghum	nucleus	13.57	18.66
KXG27463	Sorghum	nucleus	14.48	8.83

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A0A1B6QBF7	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	EnsemblPlants:KXG35258	ProteinID:KXG35258
ProteinID:KXG35258.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	EnsemblPlantsGene:SORBI_3002G150700
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0001C80DC0	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:42654844..42659751

Molecular Weight (calculated)

71408.2 Da

IEP (calculated)

7.399

GRAVY (calculated)

-0.436

Length

656 amino acids

Sequence
(BLAST)

001: MAAQGQAAAG SASESGGSPA ASAAAAAAFP ATSLYVGDLH ESVQDAQLFD VFSQVGGVVS VRVCRDINSR KSLGYAYVNY NNPGDAARAL ELLNFTPING
101: KPIRIMYSNR DPSSRKSGAG NIFIKNLDKS IDNKALYDTF CAFGNILSCK IATDPSGESR GYGFVQFERD ESAQSAIDKL NGMLINDKKV YVGPFVRKQD
201: RENVSSNFKF SNVYVKNLLD TVTDDELKEM FGKYGSITSA VVMRDSDGKS RCFGFVNFEN ADDAAQAVQE LNGKIFNDKE LYVGRAQKKS EREMELKEKF
301: EKNIQEVAEK FQNTNLYLKN LEDNIDDEKL RELFAEYGNI TSCKVMRDSN GVSRGSGFVA FKSAEDANRA LTEMNGKMVG SKPLYVALAQ RKEDRKAKLQ
401: AQFSQMRPVA MAPSVGPRLP MFPPGVPGVG QQLFYGQPPP AFINPQAGFA FQQPLMPGMR PGGPMPNFMM PMVQQGQQPQ RPAGRRAGAS GMQQPMPMAG
501: QQQMFPRGGR GYRYPTGRGM PDPGMHSVGA VMPSPYEMGG VPMRDAGLSQ PQPVPIGALA TALANAPPDQ QRLMLGENLY PLVEQLEREQ AAKVTGMLLE
601: MDQTEVLHLL ESPDALKAKV AEAMEVLRSA QHLQQSNASP EQQLANLSLN DGVVSS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.