Factsheet for PGSC0003DMT400012508

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g062680.1.1	Tomato	cytosol	83.06	19.4
PGSC0003DMT400039842	Potato	cytosol	68.55	14.17
PGSC0003DMT400064531	Potato	cytosol	50.81	11.84
Zm00001d005276_P007	Maize	cytosol	60.48	11.47
TraesCS7D01G287900.1	Wheat	cytosol	58.87	11.44
Zm00001d019824_P004	Maize	cytosol	60.48	11.43
KXG35258	Sorghum	cytosol	60.48	11.43
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	54.84	11.13
TraesCS7A01G288700.1	Wheat	nucleus	58.87	11.03
Os09t0115400-01	Rice	nucleus	58.06	10.88
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	57.26	10.76
PGSC0003DMT400066245	Potato	extracellular	55.65	10.73
Os04t0504800-01	Rice	plasma membrane	56.45	10.62
TraesCS5D01G167000.1	Wheat	nucleus, unclear	55.65	10.6
TraesCS5B01G159400.1	Wheat	cytosol	55.65	10.6
TraesCS5A01G161800.2	Wheat	nucleus	55.65	10.6
GSMUA_Achr4P20270_001	Banana	cytosol	54.03	10.42
TraesCS7B01G182800.3	Wheat	cytosol	56.45	10.37
GSMUA_Achr9P00990_001	Banana	cytosol	54.03	10.29
TraesCS2D01G358000.1	Wheat	cytosol	54.84	10.24
TraesCS2B01G378400.1	Wheat	nucleus	54.84	10.23
TraesCS2A01G359000.1	Wheat	cytosol	54.84	10.23
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	58.87	10.2
GSMUA_AchrUn_...	Banana	cytosol	53.23	10.12
HORVU5Hr1G050560.1	Barley	plastid	56.45	9.97
Zm00001d025801_P005	Maize	cytosol, plastid	52.42	9.97
PGSC0003DMT400014744	Potato	nucleus	29.03	9.89
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	51.61	9.82
GSMUA_Achr4P09890_001	Banana	cytosol	51.61	9.82
PGSC0003DMT400023075	Potato	nucleus	28.23	9.64
EES12460	Sorghum	plastid	51.61	9.64
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	47.58	9.1
PGSC0003DMT400021673	Potato	cytosol	43.55	8.6
GSMUA_Achr7P05430_001	Banana	nucleus	56.45	7.74
PGSC0003DMT400033802	Potato	cytosol	37.9	7.73
PGSC0003DMT400020621	Potato	nucleus	22.58	7.07
PGSC0003DMT400066072	Potato	nucleus	22.58	6.83
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	20.97	6.48
PGSC0003DMT400029379	Potato	nucleus	20.16	6.25
PGSC0003DMT400013036	Potato	nucleus	20.16	6.25
PGSC0003DMT400018998	Potato	nucleus	20.97	6.22
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	20.16	6.0
PGSC0003DMT400066648	Potato	nucleus	20.16	5.95
PGSC0003DMT400042504	Potato	nucleus	19.35	5.81
PGSC0003DMT400058919	Potato	nucleus	19.35	5.76
PGSC0003DMT400057203	Potato	cytosol	18.55	5.71

Protein Annotations

EnsemblPlants:PGSC0003DMT400012508	EnsemblPlantsGene:PGSC0003DMG401004883	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	PFAM:PF00076	PFscan:PS50102	PGSC:PGSC0003DMG401004883	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000296721F	UniProt:M1A1B9	MapMan:35.1	:	:

Description

Polyadenylate-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401004883]

Coordinates

chr6:+:48705489..48707706

Molecular Weight (calculated)

13878.4 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.640

Length

124 amino acids

Sequence
(BLAST)

001: MEMLDFTPVN GKSIRVKRSH RDPNSPKNRT ANLFIRNLDK SIDIEALHDT FSSFGHIPSC KIVTDSNGQS KGYGFVQFDN DESAQSAIDK LNGMLINGKQ
101: VYVAHALCKE KSGRGTSWGR SMEW

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.