Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g108500.2.1 | Tomato | nucleus | 96.67 | 98.31 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 68.57 | 69.57 |
| KRH71168 | Soybean | nucleus | 66.9 | 65.2 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 48.1 | 64.74 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 48.1 | 64.74 |
| KRH50251 | Soybean | nucleus | 66.19 | 64.5 |
| GSMUA_Achr10P... | Banana | nucleus | 48.1 | 64.33 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 58.81 | 63.33 |
| PGSC0003DMT400020621 | Potato | nucleus | 58.57 | 62.12 |
| CDX92304 | Canola | nucleus | 62.38 | 61.79 |
| CDY50959 | Canola | nucleus | 63.1 | 61.63 |
| CDY29341 | Canola | nucleus | 61.43 | 61.58 |
| CDY16528 | Canola | nucleus | 62.14 | 61.56 |
| Bra022389.1-P | Field mustard | nucleus | 62.38 | 61.5 |
| CDY68866 | Canola | nucleus | 60.71 | 61.45 |
| CDY22988 | Canola | nucleus | 61.43 | 61.43 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 50.0 | 61.4 |
| CDX99265 | Canola | nucleus | 61.9 | 61.32 |
| CDY28101 | Canola | nucleus | 62.62 | 61.31 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 49.76 | 61.11 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 49.52 | 60.82 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 45.24 | 60.7 |
| Bra001735.1-P | Field mustard | nucleus | 59.52 | 60.68 |
| CDX82310 | Canola | nucleus | 59.52 | 60.68 |
| CDY32840 | Canola | nucleus | 60.71 | 60.57 |
| AT3G19130.1 | Thale cress | nucleus | 62.38 | 60.23 |
| CDY18570 | Canola | nucleus | 61.67 | 59.68 |
| Bra040663.1-P | Field mustard | nucleus | 52.86 | 59.68 |
| CDX95462 | Canola | nucleus | 61.43 | 59.45 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 36.43 | 59.07 |
| Bra037538.1-P | Field mustard | nucleus | 53.33 | 55.58 |
| AT1G49600.3 | Thale cress | nucleus | 59.29 | 55.33 |
| Os04t0449900-01 | Rice | plastid | 49.52 | 53.75 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 48.33 | 53.56 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 50.0 | 52.11 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 53.57 | 51.96 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 52.38 | 51.89 |
| KXG35789 | Sorghum | nucleus | 54.05 | 51.83 |
| PGSC0003DMT400013036 | Potato | nucleus | 49.29 | 51.75 |
| PGSC0003DMT400029379 | Potato | nucleus | 49.29 | 51.75 |
| Zm00001d020748_P002 | Maize | plasma membrane | 53.33 | 51.73 |
| PGSC0003DMT400057203 | Potato | cytosol | 48.57 | 50.62 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.62 | 50.34 |
| TraesCS2B01G335700.1 | Wheat | plastid | 49.76 | 49.76 |
| TraesCS2D01G315400.2 | Wheat | plastid | 50.0 | 49.53 |
| TraesCS2A01G317700.2 | Wheat | plastid | 50.0 | 49.53 |
| EES10898 | Sorghum | nucleus | 49.76 | 49.41 |
| PGSC0003DMT400042504 | Potato | nucleus | 48.33 | 49.15 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 48.57 | 48.92 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 48.33 | 48.68 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 50.24 | 47.85 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 48.33 | 47.54 |
| PGSC0003DMT400018998 | Potato | nucleus | 47.14 | 47.37 |
| EES05289 | Sorghum | plastid | 48.1 | 46.44 |
| Zm00001d050838_P001 | Maize | plastid | 47.14 | 46.05 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 48.57 | 44.74 |
| Zm00001d025551_P002 | Maize | plastid | 46.67 | 43.36 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.43 | 41.14 |
| Bra014216.1-P | Field mustard | nucleus | 53.81 | 39.51 |
| PGSC0003DMT400007513 | Potato | mitochondrion, nucleus | 25.48 | 26.68 |
| PGSC0003DMT400058919 | Potato | nucleus | 25.95 | 26.14 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 25.71 | 25.9 |
| PGSC0003DMT400066072 | Potato | nucleus | 24.76 | 25.37 |
| PGSC0003DMT400012508 | Potato | nucleus | 5.95 | 20.16 |
| PGSC0003DMT400014744 | Potato | nucleus | 14.76 | 17.03 |
| PGSC0003DMT400023075 | Potato | nucleus | 14.52 | 16.8 |
| PGSC0003DMT400066245 | Potato | extracellular | 21.67 | 14.15 |
| PGSC0003DMT400039842 | Potato | cytosol | 19.52 | 13.67 |
| PGSC0003DMT400033802 | Potato | cytosol | 19.52 | 13.49 |
| PGSC0003DMT400021673 | Potato | cytosol | 20.0 | 13.38 |
| PGSC0003DMT400064531 | Potato | cytosol | 16.67 | 13.16 |
Protein Annotations
| EntrezGene:102577916 | MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M1CFY2 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | EnsemblPlantsGene:PGSC0003DMG400025900 | PGSC:PGSC0003DMG400025900 | EnsemblPlants:PGSC0003DMT400066648 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000296A59D |
| RefSeq:XP_006346456.1 | SEG:seg | : | : | : | : |
Description
RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025900]
Coordinates
chr1:-:84890021..84896004
Molecular Weight (calculated)
46253.6 Da
IEP (calculated)
6.792
GRAVY (calculated)
-0.740
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGGDLNQQQ QQQQQQQQQQ QQWVAMQQYQ QQWMAMQYPA AAMAMQQQMM YGQQYMPYYH QQQQQQKMQQ PPTQIQNSSE DNKTIWIGDL QQWMDENYLH
101: SCFSHAGEVI SVKIIRNKQT GQSERYGFVE FNTHAAAEKV LQSYNGTMMP NAEQPFRLNW AAFSAGEKRA ETGSDFSIFV GDLASDVTDT MLRDTFASRF
201: PSVKGAKVVV DANTGHSKGY GFVRFGDESE RSRAMTEMNG IYCSSRPMRV GVATPKKPSA QQQFSSQAVI LSGGYASNGS ATHGSQSDGD SSNTTIFVGG
301: LDSDVTDEEL RQSFTQFGEV VSVKIPAGKG CGFVQFSDRS SAQEAIQKLS GAIIGKQAVR LSWGRSPANK QMRTDSGNGG GYYGRQNYGG YGYGASQNQD
401: SGMYAAGAAS NGYGNQQPVS
101: SCFSHAGEVI SVKIIRNKQT GQSERYGFVE FNTHAAAEKV LQSYNGTMMP NAEQPFRLNW AAFSAGEKRA ETGSDFSIFV GDLASDVTDT MLRDTFASRF
201: PSVKGAKVVV DANTGHSKGY GFVRFGDESE RSRAMTEMNG IYCSSRPMRV GVATPKKPSA QQQFSSQAVI LSGGYASNGS ATHGSQSDGD SSNTTIFVGG
301: LDSDVTDEEL RQSFTQFGEV VSVKIPAGKG CGFVQFSDRS SAQEAIQKLS GAIIGKQAVR LSWGRSPANK QMRTDSGNGG GYYGRQNYGG YGYGASQNQD
401: SGMYAAGAAS NGYGNQQPVS
001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
Arabidopsis Description
RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.