Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 72.89 | 84.1 |
| CDY50959 | Canola | nucleus | 80.0 | 83.72 |
| CDY28101 | Canola | nucleus | 78.89 | 82.75 |
| CDY16528 | Canola | nucleus | 76.0 | 80.66 |
| CDY32840 | Canola | nucleus | 75.11 | 80.28 |
| CDY68866 | Canola | nucleus | 73.78 | 80.0 |
| CDY29341 | Canola | nucleus | 74.0 | 79.47 |
| Bra040663.1-P | Field mustard | nucleus | 64.44 | 77.96 |
| AT3G19130.1 | Thale cress | nucleus | 68.22 | 70.57 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 56.0 | 60.87 |
| Solyc01g108500.2.1 | Tomato | nucleus | 55.33 | 60.29 |
| PGSC0003DMT400066648 | Potato | nucleus | 55.33 | 59.29 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 40.0 | 57.69 |
| KRH50251 | Soybean | nucleus | 55.11 | 57.54 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 39.78 | 57.19 |
| KRH71168 | Soybean | nucleus | 54.67 | 57.08 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 39.56 | 57.05 |
| Solyc10g050860.1.1 | Tomato | nucleus | 54.22 | 57.01 |
| GSMUA_Achr10P... | Banana | nucleus | 39.56 | 56.69 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 41.11 | 54.09 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 40.89 | 53.8 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 40.89 | 53.8 |
| Bra014216.1-P | Field mustard | nucleus | 66.67 | 52.45 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.11 | 52.38 |
| AT1G47500.1 | Thale cress | nucleus | 49.11 | 50.92 |
| AT1G47490.1 | Thale cress | nucleus | 48.67 | 50.69 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 28.89 | 50.19 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 44.89 | 50.12 |
| Os04t0449900-01 | Rice | plastid | 41.56 | 48.32 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 40.44 | 48.02 |
| AT5G54900.1 | Thale cress | nucleus | 41.11 | 47.8 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 44.89 | 47.64 |
| KXG35789 | Sorghum | nucleus | 46.22 | 47.49 |
| Zm00001d020748_P002 | Maize | plasma membrane | 45.11 | 46.88 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 45.11 | 46.88 |
| AT1G11650.2 | Thale cress | nucleus | 41.56 | 46.17 |
| TraesCS2D01G315400.2 | Wheat | plastid | 42.22 | 44.81 |
| TraesCS2A01G317700.2 | Wheat | plastid | 42.22 | 44.81 |
| TraesCS2B01G335700.1 | Wheat | plastid | 41.78 | 44.76 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 41.33 | 44.6 |
| EES10898 | Sorghum | nucleus | 41.78 | 44.44 |
| AT4G27000.1 | Thale cress | nucleus | 40.89 | 44.34 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 40.67 | 43.88 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 42.0 | 42.86 |
| EES05289 | Sorghum | plastid | 40.89 | 42.3 |
| Zm00001d050838_P001 | Maize | plastid | 40.0 | 41.86 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 39.56 | 41.69 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 41.11 | 40.57 |
| Zm00001d025551_P002 | Maize | plastid | 40.0 | 39.82 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 41.56 | 39.45 |
| AT5G19350.1 | Thale cress | cytosol | 36.89 | 39.06 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 24.67 | 26.49 |
| AT3G14100.1 | Thale cress | nucleus | 24.44 | 25.76 |
| AT1G54080.2 | Thale cress | nucleus | 23.56 | 24.65 |
| AT2G18510.1 | Thale cress | nucleus | 13.56 | 16.8 |
| AT4G34110.1 | Thale cress | cytosol | 21.33 | 15.26 |
| AT1G34140.1 | Thale cress | nucleus | 12.44 | 13.76 |
| AT2G23350.1 | Thale cress | nucleus | 20.0 | 13.6 |
| AT3G16380.1 | Thale cress | nucleus | 16.22 | 13.59 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 19.56 | 13.33 |
| AT1G49760.1 | Thale cress | cytosol | 19.56 | 13.11 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 17.56 | 12.97 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 19.33 | 12.76 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:841384 | UniProt:A0A1P8ASD0 | ProteinID:ANM59559.1 | ProteinID:ANM59560.1 |
| ArrayExpress:AT1G49600 | EnsemblPlantsGene:AT1G49600 | RefSeq:AT1G49600 | TAIR:AT1G49600 | RefSeq:AT1G49600-TAIR-G | EnsemblPlants:AT1G49600.3 |
| Symbol:ATRBP47A | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_001321909.1 | RefSeq:NP_001321910.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0008494F18 | SEG:seg | : | : | : | : |
Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
Coordinates
chr1:-:18356806..18360447
Molecular Weight (calculated)
49876.5 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.532
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQVQENFSW ICVFKHYMHF YWYGPMVQVK LSFRVLLGLY ISVFMGWIKL
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQVQENFSW ICVFKHYMHF YWYGPMVQVK LSFRVLLGLY ISVFMGWIKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.