Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54068 | Canola | cytosol | 89.87 | 92.34 |
| CDY51045 | Canola | cytosol | 89.57 | 92.04 |
| Bra018797.1-P | Field mustard | cytosol | 89.57 | 92.04 |
| KRH70673 | Soybean | nucleus | 72.43 | 75.0 |
| KRH50336 | Soybean | cytosol | 72.28 | 74.5 |
| Solyc01g107870.2.1 | Tomato | extracellular | 70.04 | 73.09 |
| PGSC0003DMT400066245 | Potato | extracellular | 69.9 | 72.94 |
| AT4G34110.1 | Thale cress | cytosol | 67.81 | 72.34 |
| Os09t0115400-01 | Rice | nucleus | 66.92 | 67.82 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 65.42 | 67.43 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 65.28 | 67.28 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 65.13 | 67.13 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 64.38 | 66.36 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 60.21 | 66.12 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 64.23 | 66.1 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 63.79 | 65.64 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 63.49 | 65.34 |
| GSMUA_AchrUn_... | Banana | cytosol | 63.49 | 65.34 |
| KXG35258 | Sorghum | cytosol | 63.79 | 65.24 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 62.3 | 65.01 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 61.55 | 64.73 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 63.64 | 64.7 |
| Zm00001d005276_P007 | Maize | cytosol | 63.04 | 64.68 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 63.93 | 64.61 |
| EES12460 | Sorghum | plastid | 63.93 | 64.61 |
| Os04t0504800-01 | Rice | plasma membrane | 63.34 | 64.49 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 63.79 | 64.36 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 63.79 | 64.36 |
| Zm00001d019824_P004 | Maize | cytosol | 62.74 | 64.18 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 63.19 | 64.05 |
| HORVU5Hr1G050560.1 | Barley | plastid | 65.42 | 62.54 |
| AT2G23350.1 | Thale cress | nucleus | 60.06 | 60.88 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 69.0 | 58.83 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 62.59 | 58.66 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 58.42 | 58.07 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 50.37 | 52.16 |
| AT1G34140.1 | Thale cress | nucleus | 29.51 | 48.65 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 47.24 | 48.03 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 64.53 | 47.9 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 48.44 | 47.65 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 35.92 | 39.57 |
| AT3G16380.1 | Thale cress | nucleus | 28.32 | 35.38 |
| AT2G18510.1 | Thale cress | nucleus | 15.2 | 28.1 |
| AT3G14100.1 | Thale cress | nucleus | 15.65 | 24.59 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 15.2 | 24.34 |
| AT1G54080.2 | Thale cress | nucleus | 15.5 | 24.19 |
| AT1G47500.1 | Thale cress | nucleus | 15.2 | 23.5 |
| AT1G11650.2 | Thale cress | nucleus | 14.16 | 23.46 |
| AT1G47490.1 | Thale cress | nucleus | 15.05 | 23.38 |
| AT4G27000.1 | Thale cress | nucleus | 14.31 | 23.13 |
| AT5G19350.1 | Thale cress | cytosol | 14.31 | 22.59 |
| AT5G54900.1 | Thale cress | nucleus | 12.67 | 21.96 |
| AT3G19130.1 | Thale cress | nucleus | 13.71 | 21.15 |
| AT1G49600.3 | Thale cress | nucleus | 13.11 | 19.56 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EntrezGene:841399 | ProteinID:AAG13056.1 | ProteinID:AEE32472.1 |
| ProteinID:AEE32473.1 | EMBL:AF370517 | ArrayExpress:AT1G49760 | EnsemblPlantsGene:AT1G49760 | RefSeq:AT1G49760 | TAIR:AT1G49760 |
| RefSeq:AT1G49760-TAIR-G | EnsemblPlants:AT1G49760.1 | TAIR:AT1G49760.1 | EMBL:AY064622 | Unigene:At.21584 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006412 |
| GO:GO:0006417 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016032 |
| GO:GO:0019538 | GO:GO:0046686 | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | RefSeq:NP_001185184.1 |
| RefSeq:NP_564554.1 | InterPro:Nucleotide-bd_a/b_plait_sf | Symbol:PAB8 | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD |
| PFAM:PF00076 | PFAM:PF00658 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 |
| PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | UniProt:Q9FXA2 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI00000A2E97 | SEG:seg | : | : | : |
Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
Coordinates
chr1:+:18416475..18420111
Molecular Weight (calculated)
72783.6 Da
IEP (calculated)
7.623
GRAVY (calculated)
-0.479
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.