Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039603.1-P | Field mustard | nucleus | 88.43 | 88.19 |
| CDY43894 | Canola | nucleus | 88.43 | 88.19 |
| CDY59539 | Canola | nucleus | 88.43 | 87.7 |
| Bra037217.1-P | Field mustard | nucleus | 88.71 | 84.51 |
| CDY66740 | Canola | nucleus | 88.71 | 84.51 |
| CDY67617 | Canola | nucleus | 88.71 | 84.51 |
| KRH36396 | Soybean | endoplasmic reticulum | 73.83 | 73.42 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 75.21 | 73.19 |
| KRH27525 | Soybean | nucleus | 73.0 | 72.8 |
| Solyc03g118800.2.1 | Tomato | nucleus | 71.35 | 71.15 |
| PGSC0003DMT400023075 | Potato | nucleus | 71.07 | 71.07 |
| Os10t0457000-01 | Rice | nucleus | 69.42 | 70.99 |
| PGSC0003DMT400014744 | Potato | nucleus | 70.8 | 70.6 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 71.07 | 70.49 |
| EER94133 | Sorghum | nucleus | 68.04 | 69.58 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 67.77 | 68.91 |
| Zm00001d032807_P001 | Maize | nucleus | 67.49 | 68.25 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 68.59 | 67.66 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 68.32 | 67.39 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 68.04 | 67.12 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 67.77 | 66.85 |
| AT3G14100.1 | Thale cress | nucleus | 19.83 | 16.86 |
| AT4G34110.1 | Thale cress | cytosol | 28.65 | 16.53 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 19.01 | 16.47 |
| AT5G54900.1 | Thale cress | nucleus | 17.36 | 16.28 |
| AT1G54080.2 | Thale cress | nucleus | 19.01 | 16.05 |
| AT5G19350.1 | Thale cress | cytosol | 18.46 | 15.76 |
| AT1G49760.1 | Thale cress | cytosol | 28.1 | 15.2 |
| AT2G23350.1 | Thale cress | nucleus | 27.55 | 15.11 |
| AT1G11650.2 | Thale cress | nucleus | 16.8 | 15.06 |
| AT4G27000.1 | Thale cress | nucleus | 17.08 | 14.94 |
| AT1G47490.1 | Thale cress | nucleus | 17.36 | 14.58 |
| AT1G47500.1 | Thale cress | nucleus | 17.08 | 14.29 |
| AT3G19130.1 | Thale cress | nucleus | 17.08 | 14.25 |
| AT1G34140.1 | Thale cress | nucleus | 15.7 | 14.0 |
| AT1G49600.3 | Thale cress | nucleus | 16.8 | 13.56 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 24.52 | 13.48 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 21.76 | 12.97 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 23.97 | 12.76 |
| AT3G16380.1 | Thale cress | nucleus | 18.46 | 12.48 |
Protein Annotations
| MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | EntrezGene:816366 | UniProt:A0A178VZK5 | ProteinID:AAD12222.1 | ProteinID:AEC06776.1 |
| ArrayExpress:AT2G18510 | EnsemblPlantsGene:AT2G18510 | RefSeq:AT2G18510 | TAIR:AT2G18510 | RefSeq:AT2G18510-TAIR-G | EnsemblPlants:AT2G18510.1 |
| TAIR:AT2G18510.1 | EMBL:AY150466 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_179441.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP11294.1 | PFAM:PF00076 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44799 | UniProt:Q9ZU66 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000AC20E |
| Symbol:emb2444 | SEG:seg | : | : | : | : |
Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
Coordinates
chr2:-:8030960..8033619
Molecular Weight (calculated)
39890.3 Da
IEP (calculated)
8.074
GRAVY (calculated)
-0.735
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.