Factsheet for Zm00001d014094_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94133	Sorghum	nucleus	95.8	96.34
Zm00001d032807_P001	Maize	nucleus	96.64	96.1
Os10t0457000-01	Rice	nucleus	89.36	89.86
TraesCS1D01G142300.1	Wheat	nucleus	88.8	86.14
HORVU1Hr1G038240.1	Barley	nucleus	88.8	86.14
TraesCS1B01G160900.1	Wheat	nucleus	88.52	85.87
TraesCS1A01G143500.1	Wheat	nucleus	88.24	85.6
GSMUA_Achr5P20140_001	Banana	nucleus	76.19	74.32
VIT_04s0023g01470.t01	Wine grape	nucleus	77.31	73.99
KRH36396	Soybean	endoplasmic reticulum	75.63	73.97
KRH27525	Soybean	nucleus	75.07	73.63
Solyc03g118800.2.1	Tomato	nucleus	72.55	71.15
PGSC0003DMT400023075	Potato	nucleus	71.99	70.8
PGSC0003DMT400014744	Potato	nucleus	71.99	70.6
AT2G18510.1	Thale cress	nucleus	68.91	67.77
CDY43894	Canola	nucleus	67.79	66.48
Bra039603.1-P	Field mustard	nucleus	67.79	66.48
CDY66740	Canola	nucleus	70.87	66.4
Bra037217.1-P	Field mustard	nucleus	70.59	66.14
CDY67617	Canola	nucleus	70.59	66.14
CDY59539	Canola	nucleus	67.79	66.12
Zm00001d009512_P001	Maize	mitochondrion	8.96	24.24
Zm00001d026528_P001	Maize	plastid	14.57	23.64
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	8.96	22.54
Zm00001d021149_P001	Maize	cytosol	10.36	22.42
Zm00001d010739_P001	Maize	mitochondrion	7.56	21.77
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	31.09	17.02
Zm00001d025801_P005	Maize	cytosol, plastid	29.69	16.26
Zm00001d013812_P001	Maize	nucleus	18.21	16.01
Zm00001d005276_P007	Maize	cytosol	28.29	15.44
Zm00001d048824_P004	Maize	nucleus	19.33	15.44
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	18.21	15.33
Zm00001d025551_P002	Maize	plastid	19.05	15.04
Zm00001d019824_P004	Maize	cytosol	27.45	14.94
Zm00001d031525_P004	Maize	nucleus	19.05	14.59
Zm00001d020748_P002	Maize	plasma membrane	17.65	14.55
Zm00001d050838_P001	Maize	plastid	17.37	14.42
Zm00001d007929_P002	Maize	nucleus	14.29	14.21
Zm00001d046487_P001	Maize	cytosol	25.49	14.15
Zm00001d026346_P002	Maize	extracellular	16.53	13.79
Zm00001d002244_P003	Maize	nucleus	16.81	13.39
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	17.65	13.29
Zm00001d049759_P003	Maize	nucleus	16.81	13.1
Zm00001d016252_P001	Maize	nucleus	13.73	13.03
Zm00001d049416_P001	Maize	extracellular, nucleus	16.25	12.72
Zm00001d021633_P006	Maize	nucleus	16.53	12.69
Zm00001d047790_P001	Maize	plastid	24.65	11.97
Zm00001d006496_P004	Maize	nucleus	16.53	10.87
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	8.12	10.82
Zm00001d027869_P002	Maize	nucleus	19.05	8.91
Zm00001d026522_P001	Maize	nucleus	4.2	6.15

Protein Annotations

EntrezGene:100192006	MapMan:16.4.1.2.4.4	Gene3D:3.30.70.330	ProteinID:AQK65207.1	UniProt:B4FAZ3	EMBL:BT034281
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44799	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:SF3B4_RRM1	InterPro:SF3B4_RRM2	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B60FB	EnsemblPlantsGene:Zm00001d014094
EnsemblPlants:Zm00001d014094_P002	EnsemblPlants:Zm00001d014094_T002	SEG:seg	:	:	:

Description

RNA-binding (RRM/RBD/RNP motifs) family protein

Coordinates

chr5:-:32207822..32212251

Molecular Weight (calculated)

38967.7 Da

IEP (calculated)

8.414

GRAVY (calculated)

-0.666

Length

357 amino acids

Sequence
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATTYVG NLDPQVSEEL LWELFVQAGP VVNVYVPKDR VTNLHQGYGF VEFRSEEDAD YAIKTLNMIK LYGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFVS YESFESSDQA IEAMNNQHLC NRPITVSYAY KKDTKGERHG
201: TPAERLLAAN NPGSQKNRPH TMFASGPPTQ GHPNGGPPVP RPYGNGTIPG QIQHIRQPPP PPVGQFPPPM QMHGQPTWPA QHSMPPPMPS QLQYRLPMRP
301: PPPNMMPPPV GMVRPPPPPT GMSAPPMWMP PPPPPHQGGG MPPPPMSMPP PPPPPSS

Best Arabidopsis Sequence Match ( AT2G18510.1 )
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG

Arabidopsis Description

emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.