Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009512_P001 | Maize | mitochondrion | 30.59 | 87.12 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 30.85 | 81.69 |
| Zm00001d010739_P001 | Maize | mitochondrion | 25.8 | 78.23 |
| Os07t0516900-01 | Rice | plastid | 42.02 | 62.95 |
| Zm00001d021633_P006 | Maize | nucleus | 76.6 | 61.94 |
| Zm00001d021149_P001 | Maize | cytosol | 26.33 | 60.0 |
| Zm00001d006496_P004 | Maize | nucleus | 67.82 | 46.96 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 32.18 | 45.15 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 55.32 | 44.83 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 55.32 | 44.83 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 54.79 | 44.4 |
| Zm00001d013812_P001 | Maize | nucleus | 38.3 | 35.47 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 30.59 | 34.74 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 41.49 | 34.21 |
| Zm00001d026346_P002 | Maize | extracellular | 38.03 | 33.41 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 28.46 | 32.62 |
| Zm00001d002244_P003 | Maize | nucleus | 38.83 | 32.59 |
| GSMUA_Achr10P... | Banana | nucleus | 35.64 | 30.88 |
| Zm00001d007929_P002 | Maize | nucleus | 28.46 | 29.8 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 31.65 | 29.24 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 31.38 | 27.83 |
| Zm00001d020748_P002 | Maize | plasma membrane | 30.59 | 26.56 |
| Zm00001d050838_P001 | Maize | plastid | 30.05 | 26.28 |
| Zm00001d025551_P002 | Maize | plastid | 31.12 | 25.89 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 29.26 | 23.21 |
| Zm00001d026528_P001 | Maize | plastid | 13.56 | 23.18 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 27.13 | 23.13 |
| Zm00001d027869_P002 | Maize | nucleus | 31.91 | 15.73 |
| Zm00001d031525_P004 | Maize | nucleus | 19.41 | 15.67 |
| Zm00001d048824_P004 | Maize | nucleus | 17.55 | 14.77 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 13.03 | 13.73 |
| Zm00001d032807_P001 | Maize | nucleus | 13.03 | 13.65 |
| Zm00001d049759_P003 | Maize | nucleus | 16.49 | 13.54 |
| Zm00001d046487_P001 | Maize | cytosol | 15.16 | 8.86 |
| Zm00001d047790_P001 | Maize | plastid | 15.96 | 8.16 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 12.5 | 7.21 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 12.5 | 7.21 |
| Zm00001d005276_P007 | Maize | cytosol | 12.23 | 7.03 |
| Zm00001d019824_P004 | Maize | cytosol | 12.23 | 7.01 |
| Zm00001d026522_P001 | Maize | nucleus | 1.86 | 2.87 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | UniProt:A0A1D6H6F2 | ProteinID:AQK70374.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0008449863 | EnsemblPlantsGene:Zm00001d016252 | EnsemblPlants:Zm00001d016252_P001 | EnsemblPlants:Zm00001d016252_T001 | SEG:seg |
Description
Polyadenylate-binding protein RBP45C
Coordinates
chr5:-:153401527..153403274
Molecular Weight (calculated)
41675.9 Da
IEP (calculated)
5.542
GRAVY (calculated)
-0.697
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTAAEVGD ADAAGDVQIK GAKENAQPMA VAQQQLSGSE ALEKENIKNL YESEPTLGFL CLASEAMQPP HQPSMNGQHA QPQPQGPGVP MPPQQQAPPL
101: PYYQQHPPPQ YYQQALLQPW GQQQQYAAPP LQYPPPPQTQ QYATPPQQYA PLPQQQYAPP PQQQYAPSPY GTTPGSGEVR TLWIGDLQHW MDENYLHYNA
201: FAAVAQQIAS VKIIRNKQTG HSEGYGFIEF SSRATAEHTL MNFNGQMMPN VEMTFKLNWA SASTGDKRGD SGSDHTIFVG DLAHDVTDSM LEDVFRAKYP
301: SVRRANVVVD RMTGWPKGYG FVRFGDLNEQ AHAMTEMNGM LLSTRQMRIG ATANKKNRDA QQTYATDGMY LSNIFI
101: PYYQQHPPPQ YYQQALLQPW GQQQQYAAPP LQYPPPPQTQ QYATPPQQYA PLPQQQYAPP PQQQYAPSPY GTTPGSGEVR TLWIGDLQHW MDENYLHYNA
201: FAAVAQQIAS VKIIRNKQTG HSEGYGFIEF SSRATAEHTL MNFNGQMMPN VEMTFKLNWA SASTGDKRGD SGSDHTIFVG DLAHDVTDSM LEDVFRAKYP
301: SVRRANVVVD RMTGWPKGYG FVRFGDLNEQ AHAMTEMNGM LLSTRQMRIG ATANKKNRDA QQTYATDGMY LSNIFI
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.