Factsheet for GSMUA_Achr8P03580_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P24980_001	Banana	cytosol	69.78	85.8
GSMUA_Achr6P29410_001	Banana	nucleus	68.8	85.37
GSMUA_Achr10P...	Banana	nucleus	74.69	70.05
GSMUA_Achr9P15210_001	Banana	nucleus	48.16	62.82
Os03t0569900-01	Rice	nucleus	61.92	62.69
GSMUA_Achr3P06840_001	Banana	nucleus	47.42	61.86
Zm00001d013812_P001	Maize	nucleus	61.18	61.33
OQU91463	Sorghum	nucleus	61.43	61.12
GSMUA_Achr6P10190_001	Banana	nucleus	45.95	59.74
GSMUA_Achr10P...	Banana	nucleus	45.95	59.55
Zm00001d009512_P001	Maize	mitochondrion	18.18	56.06
GSMUA_Achr8P31320_001	Banana	nucleus	53.07	54.0
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	18.18	52.11
Os07t0516900-01	Rice	plastid	31.94	51.79
Zm00001d010739_P001	Maize	mitochondrion	15.48	50.81
TraesCS2B01G247400.4	Wheat	nucleus	57.25	50.22
TraesCS2D01G227900.5	Wheat	nucleus	57.25	50.22
TraesCS2A01G221900.2	Wheat	nucleus	57.0	50.0
GSMUA_Achr3P01720_001	Banana	mitochondrion	47.42	47.89
Zm00001d021633_P006	Maize	nucleus	53.07	46.45
KXG36337	Sorghum	nucleus	54.3	46.33
EER95718	Sorghum	nucleus	40.54	45.58
TraesCS2D01G266400.1	Wheat	nucleus	39.8	45.51
Zm00001d007929_P002	Maize	nucleus	39.8	45.13
TraesCS2A01G256500.1	Wheat	nucleus	39.31	44.94
GSMUA_Achr6P09470_001	Banana	nucleus	16.22	44.9
HORVU2Hr1G046380.2	Barley	nucleus	45.7	42.18
Zm00001d006496_P004	Maize	nucleus	53.07	39.78
HORVU2Hr1G064650.4	Barley	nucleus	32.92	39.3
Zm00001d016252_P001	Maize	nucleus	29.24	31.65
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	16.46	25.0
GSMUA_Achr9P14120_001	Banana	nucleus	24.08	24.14
GSMUA_Achr6P11660_001	Banana	mitochondrion	24.08	23.17
GSMUA_Achr10P...	Banana	mitochondrion	24.08	23.06
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	23.83	22.35
GSMUA_Achr11P...	Banana	nucleus	23.59	21.62
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	22.6	18.55
GSMUA_Achr5P20140_001	Banana	nucleus	15.72	17.49
GSMUA_Achr4P00840_001	Banana	cytosol	20.15	16.94
GSMUA_Achr9P00990_001	Banana	cytosol	25.55	15.98
GSMUA_Achr4P20270_001	Banana	cytosol	24.82	15.71
GSMUA_AchrUn_...	Banana	cytosol	24.57	15.34
GSMUA_Achr4P09890_001	Banana	cytosol	24.32	15.18
GSMUA_Achr5P24940_001	Banana	plastid	23.83	14.56
GSMUA_Achr9P10860_001	Banana	cytosol	22.6	12.87
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	19.9	12.5
GSMUA_Achr7P05430_001	Banana	nucleus	24.08	10.84

Protein Annotations

EnsemblPlants:GSMUA_Achr8P03580_001	EnsemblPlants:GSMUA_Achr8T03580_001	EnsemblPlantsGene:GSMUA_Achr8G03580_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295245E	UniProt:M0TMB0	MapMan:16.9.4	:

Description

Putative Uncharacterized RNA-binding protein C23E6.01c [Source:GMGC_GENE;Acc:GSMUA_Achr8G03580_001]

Coordinates

chr8:+:2436823..2442660

Molecular Weight (calculated)

45608.6 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.462

Length

407 amino acids

Sequence
(BLAST)

001: MAPQPASADE IRTLWIGDLP YWMEESYLYS CFVHTGEMVS VKVIRNKQTG QSEGYGFIEF VSRAAADRIL QTYNGQVMPN TEQAFRLNWA SCGAGERRGD
101: GADYTIFVGD LGADVTDYLL QETFMTRYAS VKGAKVVTDR LTGRSKGYGF VKFGDLSEQT RAMTEMNGIY CSTRPMRIGP AANKNTLGTQ QQYPTNASYQ
201: NAQGAESEND PNNTTIFVGG LDTNVTDDHL RQVFSTYGEI VYVKIPVGKR CGFVQFASRA NAEEALRMLN GTPLGGQNIR LSWGRSPANK QPQQDPNQWN
301: GSYYGYAQNY NTYGYTPPQD PNMYAYAAYT GYGNYQQQQQ PPPPQHPPPQ VFLAYCFLPI FLHMISHFIS SSLPLTLSTF PTPLLPHFAH FDDILQMTCT
401: LMQCEHF

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.