Factsheet for Zm00001d006496_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36337	Sorghum	nucleus	77.53	88.26
Zm00001d021633_P006	Maize	nucleus	73.11	85.38
Zm00001d009512_P001	Maize	mitochondrion	19.34	79.55
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	19.34	73.94
Zm00001d010739_P001	Maize	mitochondrion	16.57	72.58
TraesCS2D01G227900.5	Wheat	nucleus	60.96	71.34
TraesCS2B01G247400.4	Wheat	nucleus	60.59	70.91
TraesCS2A01G221900.2	Wheat	nucleus	60.59	70.91
Zm00001d016252_P001	Maize	nucleus	46.96	67.82
Os07t0516900-01	Rice	plastid	30.57	66.14
GSMUA_Achr9P24980_001	Banana	cytosol	38.49	63.14
GSMUA_Achr6P29410_001	Banana	nucleus	37.94	62.8
Zm00001d013812_P001	Maize	nucleus	43.09	57.64
Zm00001d021149_P001	Maize	cytosol	17.13	56.36
Zm00001d026346_P002	Maize	extracellular	42.91	54.44
GSMUA_Achr10P...	Banana	nucleus	42.73	53.46
Zm00001d049416_P001	Maize	extracellular, nucleus	44.75	53.29
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	39.78	53.07
Zm00001d002244_P003	Maize	nucleus	43.65	52.9
HORVU2Hr1G046380.2	Barley	nucleus	39.41	48.53
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	35.73	45.75
Zm00001d007929_P002	Maize	nucleus	30.2	45.68
Zm00001d020748_P002	Maize	plasma membrane	35.73	44.8
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	21.18	42.91
Zm00001d050838_P001	Maize	plastid	33.33	42.09
Zm00001d025551_P002	Maize	plastid	33.89	40.71
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	34.07	39.03
Zm00001d026528_P001	Maize	plastid	10.13	25.0
Zm00001d031525_P004	Maize	nucleus	21.18	24.68
Zm00001d048824_P004	Maize	nucleus	20.07	24.38
Zm00001d027869_P002	Maize	nucleus	33.89	24.12
Zm00001d049759_P003	Maize	nucleus	18.6	22.05
Zm00001d026522_P001	Maize	nucleus	8.84	19.67
Zm00001d014094_P002	Maize	extracellular, plasma membrane	10.87	16.53
Zm00001d032807_P001	Maize	nucleus	10.68	16.16
Zm00001d046487_P001	Maize	cytosol	16.57	14.0
Zm00001d019824_P004	Maize	cytosol	16.76	13.87
Zm00001d005276_P007	Maize	cytosol	16.57	13.76
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	16.39	13.65
Zm00001d025801_P005	Maize	cytosol, plastid	15.84	13.19
Zm00001d047790_P001	Maize	plastid	15.29	11.29

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A1D6EX30	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM24049.1	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0008430021	EnsemblPlantsGene:Zm00001d006496	EnsemblPlants:Zm00001d006496_P004	EnsemblPlants:Zm00001d006496_T004	SEG:seg

Description

Polyadenylate-binding protein RBP45C

Coordinates

chr2:+:209838130..209842773

Molecular Weight (calculated)

60420.1 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.907

Length

543 amino acids

Sequence
(BLAST)

001: MQPLHQPPMN GQHGPPPPQG SGVPTASQQQ APPPSYYQQQ QQQQQGPPPQ YYQQGPPQPW AQQQQYAPPP PQYPPQMQQY APPPQQYAPP PQQQYAAPPQ
101: QQYAAPPPQY APPPPQYAPP PQQYAQPPQY AQPPQYGTTP GSGEVRTLWI GDLQYWMDEN YLHYNAFAPV AQQIASVKII RNKQTGHSEG YGFIEFYSQA
201: AAEHTLMNFN GQMMPNIEMA FKLNWASAST GDKRGDNGSD HAIFVGDLAP DVTDSMLEDV FRANYPSVRG AKVVVDRITG RPKGYGFVHF GDLNEQARAM
301: TEMNGMMLST RKMRIGAAAS KKNTDAQQTY ATNGAYQSSQ GNCSENDPNN TTVFVGGLDS NVDEEYLRQI FTPYGEISYV KIPVGKHCGF VQFTSRSCAE
401: EAIQMLNGSQ IGGQKARLSW GRSTQNRQAS QHDANSQYNG NNYYRYQQPG NEGYSYGAPN AQDPSIQNYY GYPGYGNYEQ QSTQEQQQQQ PPPAQEQPPP
501: APQAVTIIVV TIAWALLECY QIRGTTVRAV PCRMRRPEDM EGI

Best Arabidopsis Sequence Match ( AT1G11650.1 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.