Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95718 | Sorghum | nucleus | 79.39 | 78.73 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 53.2 | 53.65 |
| TraesCS2A01G256500.1 | Wheat | nucleus | 52.65 | 53.09 |
| Zm00001d009512_P001 | Maize | mitochondrion | 18.66 | 50.76 |
| HORVU2Hr1G064650.4 | Barley | nucleus | 47.91 | 50.44 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 19.22 | 48.59 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 44.01 | 48.17 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 43.45 | 47.13 |
| Zm00001d010739_P001 | Maize | mitochondrion | 16.16 | 46.77 |
| Zm00001d013812_P001 | Maize | nucleus | 52.09 | 46.06 |
| Zm00001d021149_P001 | Maize | cytosol | 18.66 | 40.61 |
| GSMUA_Achr10P... | Banana | nucleus | 48.47 | 40.09 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 45.13 | 39.8 |
| Zm00001d026346_P002 | Maize | extracellular | 41.78 | 35.05 |
| Zm00001d020748_P002 | Maize | plasma membrane | 42.06 | 34.87 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 40.95 | 34.67 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 43.18 | 33.99 |
| Zm00001d021633_P006 | Maize | nucleus | 44.01 | 33.98 |
| Zm00001d002244_P003 | Maize | nucleus | 42.34 | 33.93 |
| Zm00001d050838_P001 | Maize | plastid | 40.39 | 33.72 |
| Zm00001d025551_P002 | Maize | plastid | 38.72 | 30.75 |
| Zm00001d006496_P004 | Maize | nucleus | 45.68 | 30.2 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 38.72 | 29.32 |
| Zm00001d016252_P001 | Maize | nucleus | 29.8 | 28.46 |
| Zm00001d026528_P001 | Maize | plastid | 13.93 | 22.73 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 16.43 | 22.01 |
| Zm00001d031525_P004 | Maize | nucleus | 25.35 | 19.53 |
| Zm00001d048824_P004 | Maize | nucleus | 24.23 | 19.46 |
| Zm00001d049759_P003 | Maize | nucleus | 22.84 | 17.9 |
| Zm00001d027869_P002 | Maize | nucleus | 37.88 | 17.82 |
| Zm00001d026522_P001 | Maize | nucleus | 11.7 | 17.21 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 14.21 | 14.29 |
| Zm00001d032807_P001 | Maize | nucleus | 14.21 | 14.21 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 22.28 | 12.27 |
| Zm00001d046487_P001 | Maize | cytosol | 21.73 | 12.13 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 22.01 | 12.12 |
| Zm00001d019824_P004 | Maize | cytosol | 20.06 | 10.98 |
| Zm00001d005276_P007 | Maize | cytosol | 19.5 | 10.7 |
| Zm00001d047790_P001 | Maize | plastid | 20.06 | 9.8 |
Protein Annotations
| EntrezGene:100193183 | MapMan:16.9.4 | Gene3D:3.30.70.330 | UniProt:A0A1D6FA03 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM27937.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF9 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000182CD2C | EnsemblPlantsGene:Zm00001d007929 | EnsemblPlants:Zm00001d007929_P002 | EnsemblPlants:Zm00001d007929_T002 |
| SEG:seg | : | : | : | : | : |
Description
Polyadenylate-binding protein RBP45C
Coordinates
chr2:+:243169819..243173001
Molecular Weight (calculated)
39809.7 Da
IEP (calculated)
8.507
GRAVY (calculated)
-0.527
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPYSLSWA DAPPYHYHGR PQPAPDSPAS SDGAGPRSLW IGGLLPWMDE DYLYGCFTTS RELLSLVIKR NKQTGQSEGF GFLKFSDHTA AAHILKSYNG
101: QKMPNAVQDF KLNWATQQPA PKKLPDPDFK LDLATQQERH AAVDSSSDHS IFVGDLAYNV TGYMLHHVFK ARYPSVKSAK IIFDKFTGLS KCYGFVQFGD
201: VDEQIQALTE MNGAYCSTRP MRIGPVPKKK NSFRSKQWTE SYHDANNSRL FVGQLDQSVT SEDLMQAFSP YGELVDVKAL PGKGCGFVTY SNRASAEEAI
301: RMLNGSQLGG KAIKLSWGYP SADKQAQRNS GGGFGRDCFV WSPQYPYAYA QTCQPGYGY
101: QKMPNAVQDF KLNWATQQPA PKKLPDPDFK LDLATQQERH AAVDSSSDHS IFVGDLAYNV TGYMLHHVFK ARYPSVKSAK IIFDKFTGLS KCYGFVQFGD
201: VDEQIQALTE MNGAYCSTRP MRIGPVPKKK NSFRSKQWTE SYHDANNSRL FVGQLDQSVT SEDLMQAFSP YGELVDVKAL PGKGCGFVTY SNRASAEEAI
301: RMLNGSQLGG KAIKLSWGYP SADKQAQRNS GGGFGRDCFV WSPQYPYAYA QTCQPGYGY
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.