Factsheet for Zm00001d031525_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15356	Sorghum	nucleus	91.42	95.3
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	87.34	91.05
Os08t0520300-01	Rice	nucleus	87.12	90.83
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	86.91	90.6
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	86.7	90.38
Zm00001d049759_P003	Maize	nucleus	87.12	88.65
HORVU7Hr1G052090.3	Barley	nucleus	86.7	81.78
GSMUA_Achr9P14120_001	Banana	nucleus	64.59	74.14
VIT_04s0008g02930.t01	Wine grape	nucleus	59.66	70.03
KRH61952	Soybean	mitochondrion	63.73	69.88
KRH52613	Soybean	nucleus	64.16	68.74
Zm00001d026528_P001	Maize	plastid	28.54	60.45
Zm00001d048824_P004	Maize	nucleus	56.65	59.06
Zm00001d026522_P001	Maize	nucleus	22.96	43.85
Zm00001d009512_P001	Maize	mitochondrion	9.44	33.33
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	9.44	30.99
Zm00001d010739_P001	Maize	mitochondrion	7.73	29.03
Zm00001d013812_P001	Maize	nucleus	24.46	28.08
Zm00001d020748_P002	Maize	plasma membrane	23.61	25.4
Zm00001d007929_P002	Maize	nucleus	19.53	25.35
Zm00001d050838_P001	Maize	plastid	23.18	25.12
Zm00001d021149_P001	Maize	cytosol	8.8	24.85
Zm00001d026346_P002	Maize	extracellular	22.75	24.77
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	22.53	24.76
Zm00001d021633_P006	Maize	nucleus	24.25	24.3
Zm00001d049416_P001	Maize	extracellular, nucleus	23.39	23.9
Zm00001d002244_P003	Maize	nucleus	22.96	23.88
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	23.18	22.78
Zm00001d025551_P002	Maize	plastid	20.6	21.24
Zm00001d006496_P004	Maize	nucleus	24.68	21.18
Zm00001d016252_P001	Maize	nucleus	15.67	19.41
Zm00001d014094_P002	Maize	extracellular, plasma membrane	14.59	19.05
Zm00001d032807_P001	Maize	nucleus	14.59	18.94
Zm00001d025801_P005	Maize	cytosol, plastid	20.82	14.88
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	20.17	14.42
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	8.15	14.18
Zm00001d005276_P007	Maize	cytosol	19.31	13.76
Zm00001d019824_P004	Maize	cytosol	19.1	13.57
Zm00001d046487_P001	Maize	cytosol	18.24	13.22
Zm00001d047790_P001	Maize	plastid	20.6	13.06
Zm00001d027869_P002	Maize	nucleus	19.74	12.06

Protein Annotations

MapMan:16.9.3	Gene3D:3.30.70.330	UniProt:A0A1D6KJD6	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:ONM03059.1
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000842AA7E	EnsemblPlantsGene:Zm00001d031525	EnsemblPlants:Zm00001d031525_P004	EnsemblPlants:Zm00001d031525_T004
SEG:seg	:	:	:	:	:

Description

Oligouridylate-binding protein 1C

Coordinates

chr1:+:192892598..192897913

Molecular Weight (calculated)

50720.4 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.418

Length

466 amino acids

Sequence
(BLAST)

001: MNGAGGSHHQ QQQRLRQQQQ QALLMQQALQ QQQQQQYQSG VLAAAAAAAM TQMEPVSNGN LPPGFDPSTC RSVYVGNVNP NVTESLLIEV FQSAGLVERC
101: KLIRKEKSSF GFVDYYDRRS AALAIMTLHG RHVYGQAIKV NWAYASTQRE DTSGHFHIFV GDLSSEVNDA TLYACFSAYP SCSDARVMWD NKTGRSRGYG
201: FVSFRNQQAR ATWTFFLEFC ITVTIFILEA ETAITEMTGK WLGSRQIRCN WATKNNSEEK PETDNHNAVV LTNGSSNNSA TDASQDAGSK EPPQNNPDCT
301: TVYVGNLGHE VNRDELHRHF YNLGVGAIEE VRVQQDKGFG FVRYSTHGEA ALAIQMSNGS VVRGKPIKCS WGVKPTPPGT GSKPLPPPAA TYQPAVAMPG
401: VPQGFTTAEL LAYQRQLALS QAAAGQQHAG LAGQVSAAGL LAAAGSQALY DGYPNQSSAQ QLMYYN

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.