CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61952	Soybean	mitochondrion	95.4	97.65
VIT_04s0008g02930.t01	Wine grape	nucleus	78.16	85.64
GSMUA_Achr9P14120_001	Banana	nucleus	73.56	78.82
KRH47641	Soybean	nucleus	68.28	70.38
KRH06218	Soybean	nucleus	66.67	69.71
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	68.97	67.11
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	68.97	67.11
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	68.97	67.11
EES15356	Sorghum	nucleus	68.74	66.89
KRH02581	Soybean	mitochondrion	62.76	66.1
Os08t0520300-01	Rice	nucleus	67.59	65.77
KRH19347	Soybean	mitochondrion, nucleus	61.84	65.61
Zm00001d031525_P004	Maize	nucleus	68.74	64.16
Zm00001d049759_P003	Maize	nucleus	65.06	61.79
HORVU7Hr1G052090.3	Barley	nucleus	68.74	60.53
KRH02082	Soybean	nucleus	28.05	30.35
KRH51075	Soybean	endoplasmic reticulum	27.59	30.23
KRH20867	Soybean	nucleus	27.82	29.58
KRH11417	Soybean	nucleus	27.36	28.95
KRH71168	Soybean	nucleus	27.36	27.61
KRH50251	Soybean	nucleus	27.13	27.38
KRH29709	Soybean	cytosol	25.06	27.18
KRH24702	Soybean	nucleus	24.6	26.68
KRH61258	Soybean	nucleus	25.06	26.65
KRH51956	Soybean	nucleus	25.06	26.52
KRH05723	Soybean	nucleus	24.37	25.67
KRH23136	Soybean	cytosol	24.37	25.3
KRH15315	Soybean	nucleus	24.37	24.94
KRH10201	Soybean	mitochondrion, nucleus, plastid	16.09	23.81
KRH36396	Soybean	endoplasmic reticulum	15.86	18.9
KRH27525	Soybean	nucleus	15.4	18.41
KRH32613	Soybean	cytosol	20.0	17.79
KRH19986	Soybean	cytosol	19.77	17.37
KRH70673	Soybean	nucleus	23.45	15.74
KRH50336	Soybean	cytosol	23.45	15.67
KRH05656	Soybean	endoplasmic reticulum, nucleus	22.07	14.68
KRH15385	Soybean	nucleus	21.61	14.42
KRH67800	Soybean	cytosol	20.46	14.08
KRH70233	Soybean	cytosol	20.23	13.99
KRH61326	Soybean	cytosol, endoplasmic reticulum	20.23	13.97
KRG91724	Soybean	cytosol	20.69	13.8
KRH52023	Soybean	cytosol, endoplasmic reticulum	19.77	13.65
KRG96088	Soybean	cytosol	19.54	13.36
KRH08608	Soybean	endoplasmic reticulum	20.0	13.06

Protein Annotations

EntrezGene:100777108	MapMan:16.9.3	Gene3D:3.30.70.330	EMBL:ACUP02003425	EnsemblPlantsGene:GLYMA_06G077900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1K956	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH52613	ProteinID:KRH52613	ProteinID:KRH52613.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233A5D6	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:6029914..6037307

Molecular Weight (calculated)

47332.7 Da

IEP (calculated)

7.587

GRAVY (calculated)

-0.485

Length

435 amino acids

Sequence
(BLAST)

001: MQQRLKLQQQ QQALMQQALL QQQQMYHPGM LAAAMSQMEP VPSGNLPPGF DTSACRSVYV GNIHVNVTDK LLAEVFQSAG PLAGCKLIRK EKSSYGFVDY
101: HDRASAALAI MTLHGRQLYG QALKVNWAYA NSSREDTTGH FNIFVGDLSP EVTDATLFAC FSVYPSCSDA RVMWDHKTGR SKGYGFVSFR DHQDAQSAIN
201: DMTGKWLGNR QIRCNWATKG AGGSSNEEKN NDSQNAVMLT NGSSDGGQDN NNEDAPENNP SYTTVYVGNL PHDVTQAELH CQFHALGAGV IEEVRVQRDK
301: GFGFIRYNTH DEAALAIQMA NGRLVRGKNM KCSWGSKPTP PGTASNPLPP PAQPYQILPT AGMNQGYSPA ELLAYQRQLA LSQAAVSGLS GQALLQMTGQ
401: HGLAPASMGI NSGASQAMYD GYTGNSSRQQ LMYYR

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.