CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24702	Soybean	nucleus	95.26	95.26
KRH23136	Soybean	cytosol	78.8	75.42
KRH10201	Soybean	mitochondrion, nucleus, plastid	55.11	75.17
VIT_06s0004g02040.t01	Wine grape	nucleus	75.06	67.64
Solyc11g065880.1.1	Tomato	nucleus	70.32	67.63
PGSC0003DMT400018998	Potato	nucleus	70.07	67.22
AT5G19350.1	Thale cress	cytosol	69.33	65.41
Os03t0174100-02	Rice	nucleus	66.58	64.18
HORVU4Hr1G075700.5	Barley	nucleus	66.08	63.7
TraesCS4A01G014200.1	Wheat	nucleus	65.84	63.46
CDX92537	Canola	nucleus	65.84	63.01
EER95414	Sorghum	nucleus	65.09	62.89
CDX70874	Canola	cytosol, nucleus, peroxisome	67.33	62.79
Bra002230.1-P	Field mustard	nucleus	65.59	62.77
CDX88893	Canola	cytosol, nucleus, peroxisome	67.08	62.56
CDY13992	Canola	nucleus	65.34	62.53
GSMUA_Achr8P31320_001	Banana	nucleus	62.34	62.5
Bra006502.1-P	Field mustard	nucleus	66.83	62.33
TraesCS4D01G288600.1	Wheat	nucleus	65.59	57.55
TraesCS4B01G289600.1	Wheat	nucleus	65.84	57.52
KRH20867	Soybean	nucleus	48.13	47.19
KRH51075	Soybean	endoplasmic reticulum	46.63	47.1
KRH11417	Soybean	nucleus	48.13	46.96
KRH02082	Soybean	nucleus	46.88	46.77
KRH61258	Soybean	nucleus	45.89	44.99
KRH05723	Soybean	nucleus	45.89	44.55
KRH51956	Soybean	nucleus	45.39	44.28
KRH15315	Soybean	nucleus	46.38	43.76
KRH71168	Soybean	nucleus	43.64	40.6
KRH50251	Soybean	nucleus	43.39	40.37
Zm00001d027869_P002	Maize	nucleus	52.12	27.39
KRH61952	Soybean	mitochondrion	26.68	25.18
KRH52613	Soybean	nucleus	27.18	25.06
KRH02581	Soybean	mitochondrion	23.44	22.76
KRH19347	Soybean	mitochondrion, nucleus	23.19	22.68
KRH06218	Soybean	nucleus	23.44	22.6
KRH47641	Soybean	nucleus	23.44	22.27
KRH27525	Soybean	nucleus	15.71	17.31
KRH36396	Soybean	endoplasmic reticulum	15.71	17.26
KRH52023	Soybean	cytosol, endoplasmic reticulum	26.43	16.83
KRH15385	Soybean	nucleus	27.18	16.72
KRH61326	Soybean	cytosol, endoplasmic reticulum	26.18	16.67
KRH05656	Soybean	endoplasmic reticulum, nucleus	27.18	16.67
KRH50336	Soybean	cytosol	26.68	16.44
KRH32613	Soybean	cytosol	19.95	16.36
KRH70673	Soybean	nucleus	26.43	16.36
KRH19986	Soybean	cytosol	19.7	15.96
KRH70233	Soybean	cytosol	24.19	15.42
KRG91724	Soybean	cytosol	24.19	14.88
KRH08608	Soybean	endoplasmic reticulum	24.69	14.86
KRG96088	Soybean	cytosol	22.44	14.15
KRH67800	Soybean	cytosol	21.7	13.77

Protein Annotations

EntrezGene:100794427	MapMan:16.9.4	Gene3D:3.30.70.330	EMBL:ACUP02006817	EnsemblPlantsGene:GLYMA_11G133200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LJV7	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH29709	ProteinID:KRH29709	ProteinID:KRH29709.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000233D28B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:10183497..10187695

Molecular Weight (calculated)

44303.0 Da

IEP (calculated)

4.846

GRAVY (calculated)

-0.318

Length

401 amino acids

Sequence
(BLAST)

001: MVATAIEEVR TLWIGDLQYW VDESYLSQCF AHNGEVVSIK IIRNKLTGQP EGYGFVEFVS HASAEAFLRT YNGAQMPGTE QTFRLNWASF GDSGPDHSIF
101: VGDLAPDVTD FLLQETFRAH YPSVKGAKVV TDPATGRSKG YGFVKFADEA QRNRAMTEMN GVYCSTRPMR ISAATPKKNA SFQHQYAPPK AMYQFPAYSA
201: PVSAVAPEND VNNTTVCIGN LDLNVTEEEL KQTFMQFGDI VLVKIYAGKG YGYVQFGTRV SAEDAIQRMQ GKVIGQQVIQ ISWGSSMTAR QDVPGGWGVQ
301: MDPSQWSAYY GYGQGYEAYA YGATQDPSIY TYGAYAGYAQ YPQQVEGAQD MSVVSMPMEE LYDPLAMPDV DKLNAAYLSI HGSSILGRSL WQRTSQSLQQ
401: A

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.