CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47641	Soybean	nucleus	96.15	94.79
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	90.62	89.76
AT1G17370.1	Thale cress	mitochondrion, nucleus	84.38	83.77
CDY63384	Canola	mitochondrion, nucleus	81.49	81.1
Bra030985.1-P	Field mustard	mitochondrion, nucleus	81.25	80.86
GSMUA_Achr6P11660_001	Banana	mitochondrion	82.21	80.85
GSMUA_Achr10P...	Banana	mitochondrion	80.05	78.35
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	80.53	77.19
KRH19347	Soybean	mitochondrion, nucleus	75.0	76.1
KRH02581	Soybean	mitochondrion	75.48	76.03
GSMUA_Achr11P...	Banana	nucleus	78.85	73.87
Zm00001d048824_P004	Maize	nucleus	76.68	71.36
Zm00001d026528_P001	Maize	plastid	37.5	70.91
Os11t0620100-01	Rice	nucleus	73.56	69.39
EES08860	Sorghum	nucleus	73.32	69.16
TraesCS4B01G148600.1	Wheat	nucleus	73.8	68.99
Os07t0615400-01	Rice	nucleus	70.43	68.62
TraesCS4D01G150600.2	Wheat	nucleus	73.32	67.93
TraesCS4A01G150000.1	Wheat	mitochondrion	72.36	67.19
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	79.81	66.94
KRH61952	Soybean	mitochondrion	68.27	66.82
KRH52613	Soybean	nucleus	69.71	66.67
TraesCS2D01G176700.1	Wheat	nucleus	67.79	66.2
HORVU4Hr1G033990.7	Barley	golgi, nucleus	69.47	65.83
TraesCS2B01G195400.1	Wheat	nucleus	67.55	65.5
TraesCS2A01G169100.1	Wheat	nucleus	67.31	65.42
CDX81822	Canola	mitochondrion, nucleus	81.01	61.83
Zm00001d026522_P001	Maize	nucleus	34.13	58.2
HORVU2Hr1G031260.2	Barley	nucleus, plastid	68.03	56.94
KRH51075	Soybean	endoplasmic reticulum	27.16	28.46
KRH02082	Soybean	nucleus	27.4	28.36
KRH20867	Soybean	nucleus	27.16	27.63
KRH11417	Soybean	nucleus	27.16	27.49
KRH61258	Soybean	nucleus	25.96	26.41
KRH51956	Soybean	nucleus	25.48	25.79
KRH05723	Soybean	nucleus	25.24	25.42
KRH71168	Soybean	nucleus	25.72	24.83
KRH15315	Soybean	nucleus	25.24	24.71
KRH50251	Soybean	nucleus	25.0	24.13
KRH29709	Soybean	cytosol	22.6	23.44
KRH24702	Soybean	nucleus	22.6	23.44
KRH23136	Soybean	cytosol	22.84	22.67
KRH10201	Soybean	mitochondrion, nucleus, plastid	14.18	20.07
KRH36396	Soybean	endoplasmic reticulum	16.83	19.18
KRH27525	Soybean	nucleus	16.35	18.68
KRH19986	Soybean	cytosol	19.71	16.57
KRH32613	Soybean	cytosol	19.47	16.56
KRH70673	Soybean	nucleus	23.56	15.12
KRH50336	Soybean	cytosol	23.56	15.05
KRH05656	Soybean	endoplasmic reticulum, nucleus	22.84	14.53
KRH15385	Soybean	nucleus	22.6	14.42
KRG91724	Soybean	cytosol	21.63	13.8
KRH70233	Soybean	cytosol	20.67	13.67
KRH61326	Soybean	cytosol, endoplasmic reticulum	20.67	13.65
KRH52023	Soybean	cytosol, endoplasmic reticulum	20.43	13.49
KRH67800	Soybean	cytosol	20.43	13.45
KRH08608	Soybean	endoplasmic reticulum	20.91	13.06
KRG96088	Soybean	cytosol	19.95	13.05

Protein Annotations

EntrezGene:100814415	MapMan:16.9.3	Gene3D:3.30.70.330	EMBL:ACUP02009818	EnsemblPlantsGene:GLYMA_16G010100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1MK29	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH06218	ProteinID:KRH06218	ProteinID:KRH06218.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44160	PANTHER:PTHR44160:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SUPFAM:SSF54928	UniParc:UPI000233B1C7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:900853..907173

Molecular Weight (calculated)

45255.4 Da

IEP (calculated)

7.866

GRAVY (calculated)

-0.394

Length

416 amino acids

Sequence
(BLAST)

001: MQNHRLKQQQ QALMQQALLQ QQSLYHPGLL APPQIEPIPS GNLPPGFDPS TCRSVYVGNI HTQVTEPLLQ EVFAGTGPVE ACKLIRKDKS SYGFIHYFDR
101: RSAALAILSL NGRHLFGQPI KVNWAYASGQ REDTSGHYNI FVGDLSPEVT DATLFACFSV YPTCSDARVM WDQKTGRSRG FGFVSFRNQQ DAQSAINDLT
201: GKWLGSRQIR CNWATKGAGG TEEKQNSDAK SVVELTYGSS DGKETSNSDA PENNPQYTTV YVGNLAPEAT QLDLHHHFHS LGAGVIEEVR VQRDKGFGFV
301: RYSTHAEAAL AIQMGNAQSL LCGKQIKCSW GSKPTPAGTA SNPLPPPAAA SLPGLSATDL LVYERQLAMS KMGGVHALMH PQGQHPLKQA AIGASQAIYD
401: GGFQNVAAAQ QMMYYQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.