CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52023	Soybean	cytosol, endoplasmic reticulum	92.86	92.86
KRH15385	Soybean	nucleus	76.83	74.23
VIT_18s0001g10170.t01	Wine grape	cytosol	74.29	73.12
KRH05656	Soybean	endoplasmic reticulum, nucleus	75.87	73.09
PGSC0003DMT400039842	Potato	cytosol	68.57	72.0
KRH70673	Soybean	nucleus	71.9	69.91
KRH50336	Soybean	cytosol	71.9	69.59
Solyc12g088720.1.1	Tomato	plastid	72.7	68.77
GSMUA_Achr4P09890_001	Banana	cytosol	69.37	67.02
GSMUA_AchrUn_...	Banana	cytosol	69.21	66.87
GSMUA_Achr9P00990_001	Banana	cytosol	68.73	66.51
TraesCS7D01G287900.1	Wheat	cytosol	65.87	65.05
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	62.06	63.99
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	66.67	63.64
GSMUA_Achr4P20270_001	Banana	cytosol	64.6	63.3
TraesCS7A01G288700.1	Wheat	nucleus	66.51	63.29
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	65.24	63.04
Os09t0115400-01	Rice	nucleus	66.03	62.84
TraesCS5B01G159400.1	Wheat	cytosol	64.6	62.52
TraesCS5A01G161800.2	Wheat	nucleus	64.44	62.37
TraesCS5D01G167000.1	Wheat	nucleus, unclear	64.44	62.37
Zm00001d025801_P005	Maize	cytosol, plastid	64.44	62.27
Os04t0504800-01	Rice	plasma membrane	64.76	61.91
KXG35258	Sorghum	cytosol	64.44	61.89
Zm00001d005276_P007	Maize	cytosol	63.97	61.62
EES12460	Sorghum	plastid	64.92	61.6
TraesCS2A01G359000.1	Wheat	cytosol	64.76	61.35
Zm00001d019824_P004	Maize	cytosol	63.81	61.28
TraesCS2D01G358000.1	Wheat	cytosol	64.29	60.99
TraesCS2B01G378400.1	Wheat	nucleus	64.29	60.9
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	66.35	58.38
HORVU5Hr1G050560.1	Barley	plastid	64.13	57.55
TraesCS7B01G182800.3	Wheat	cytosol	61.59	57.48
KRG91724	Soybean	cytosol	57.78	55.83
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	54.13	52.62
KRH70233	Soybean	cytosol	51.75	51.83
KRH08608	Soybean	endoplasmic reticulum	53.49	50.6
GSMUA_Achr7P05430_001	Banana	nucleus	66.51	46.35
KRG96088	Soybean	cytosol	44.92	44.5
KRH67800	Soybean	cytosol	44.6	44.46
KRH32613	Soybean	cytosol	34.29	44.17
KRH19986	Soybean	cytosol	33.17	42.22
CDX91689	Canola	nucleus	15.56	32.13
KRH27525	Soybean	nucleus	16.83	29.12
KRH36396	Soybean	endoplasmic reticulum	16.83	29.04
KRH29709	Soybean	cytosol	16.67	26.18
KRH10201	Soybean	mitochondrion, nucleus, plastid	12.06	25.85
KRH24702	Soybean	nucleus	16.35	25.69
KRH23136	Soybean	cytosol	16.35	24.58
KRH51075	Soybean	endoplasmic reticulum	14.92	23.68
KRH02082	Soybean	nucleus	14.92	23.38
KRH61258	Soybean	nucleus	15.08	23.23
KRH20867	Soybean	nucleus	15.08	23.23
KRH11417	Soybean	nucleus	15.08	23.11
KRH51956	Soybean	nucleus	14.92	22.87
KRH05723	Soybean	nucleus	14.92	22.76
KRH02581	Soybean	mitochondrion	14.6	22.28
KRH71168	Soybean	nucleus	15.24	22.27
KRH15315	Soybean	nucleus	14.6	21.65
KRH50251	Soybean	nucleus	14.76	21.58
KRH19347	Soybean	mitochondrion, nucleus	13.97	21.46
KRH06218	Soybean	nucleus	13.65	20.67
KRH47641	Soybean	nucleus	13.81	20.62
KRH61952	Soybean	mitochondrion	13.65	20.24
KRH52613	Soybean	nucleus	13.97	20.23

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100799386	MapMan:17.4.2.5	Gene3D:3.30.70.330	ProteinID:ABC47841.1	EMBL:ACUP02002161
EnsemblPlantsGene:GLYMA_04G040700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
EnsemblPlants:KRH61326	ProteinID:KRH61326	ProteinID:KRH61326.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234
InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012
PANTHER:PTHR24012:SF349	UniProt:Q00M91	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0000E583B3
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:3249639..3253766

Molecular Weight (calculated)

68536.6 Da

IEP (calculated)

6.583

GRAVY (calculated)

-0.325

Length

630 amino acids

Sequence
(BLAST)

001: MAQVLENPTI DAAASGANPS LTTISLYVGD LHHDVNDPQL YDLFNQVAQV VSVRICRDVA TQQSLGYGYV NFSNAHDAAK AIDVLNFTPL NGKIIRIMYS
101: IRDPSARKSG AANVFIKNLD KAIDHKALYD TFSAFGNILS CKVATDASGQ SKGHGFVQFE SEESAQNAID KLNGMLINDK QVFVGPFLRK QDRESALSGT
201: KFNNVFVKNL LDSMTEADLE RIFGEYGAIT SAVVMRDVDG KSKGFGFVNF ANVDDAAKAV EALNGKNFDG KEWYVGKAQK KSERELELKG QHEQITKETV
301: DKYHGTNLYI KNLDDSVGDE ELMELFSEFG TITSCKVMRD PNGISRGSGF VSFSIAEGAT RALGEMNGKM VAGKPLYVAL AQRKEDRRAR LQAQFSQSRP
401: AAITPNVSPR MPLYPLGAPA IGQQFLYGQA APATIPQAAF GYQQHFVPGM RPGGAPNFYV PLVQQGQQGQ RPGGHRGSGP MQQLQQPLPL MHQQMLPRGH
501: VYRYPSGSNM QNIQLAGVPG GMVTYGIGQQ MPTQALASAL ANATPEQQRT MLGEALYPLV DKLEHEAAAK VTGMLLEMDQ PEVLHLIESP DALKAKVVEA
601: MDVLKKVTQQ QSNSPADQLA SLSLNDNVES

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.