Factsheet for HORVU5Hr1G050560.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G014800.1
HORVU5Hr1G029110.1
HORVU7Hr1G056460.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	HORVU4Hr1G014800.1	AT2G43970.1	21798944
AT4G34110.1	HORVU5Hr1G029110.1	AT2G43970.1	21798944
AT4G34110.1	HORVU7Hr1G056460.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G167000.1	Wheat	nucleus, unclear	92.31	99.54
TraesCS5B01G159400.1	Wheat	cytosol	92.17	99.39
TraesCS5A01G161800.2	Wheat	nucleus	91.88	99.08
Os09t0115400-01	Rice	nucleus	83.62	88.67
KXG35258	Sorghum	cytosol	76.07	81.4
Zm00001d005276_P007	Maize	cytosol	75.21	80.73
Zm00001d019824_P004	Maize	cytosol	75.21	80.49
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	73.65	72.21
VIT_18s0001g10170.t01	Wine grape	cytosol	64.25	70.47
KRH70673	Soybean	nucleus	64.1	69.44
GSMUA_Achr4P20270_001	Banana	cytosol	63.39	69.21
KRH50336	Soybean	cytosol	63.82	68.82
CDY67364	Canola	nucleus	28.63	68.6
VIT_07s0031g00210.t01	Wine grape	cytosol	63.68	68.35
KRH15385	Soybean	nucleus	62.96	67.79
Bra013104.1-P	Field mustard	cytosol	59.26	67.53
KRH05656	Soybean	endoplasmic reticulum, nucleus	62.54	67.13
CDX89664	Canola	cytosol	58.55	66.94
CDY54068	Canola	cytosol	62.25	66.92
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	58.12	66.78
Bra018797.1-P	Field mustard	cytosol	61.97	66.62
CDY51045	Canola	cytosol	61.97	66.62
AT1G49760.1	Thale cress	cytosol	62.54	65.42
KRH52023	Soybean	cytosol, endoplasmic reticulum	58.4	65.08
CDX71223	Canola	cytosol	58.97	64.89
Bra011488.1-P	Field mustard	cytosol, plastid	56.55	64.76
CDX69025	Canola	nucleus, plastid	56.27	64.65
CDY51957	Canola	cytosol, plastid	56.98	64.62
CDY62723	Canola	cytosol	56.7	64.51
Bra034603.1-P	Field mustard	cytosol, plastid	56.84	64.46
CDX75397	Canola	nucleus, plastid	56.55	64.45
KRH61326	Soybean	cytosol, endoplasmic reticulum	57.55	64.13
AT4G34110.1	Thale cress	cytosol	57.41	64.07
CDY36634	Canola	nucleus	57.98	62.71
CDY67365	Canola	plastid	26.07	62.67
Bra015220.1-P	Field mustard	cytosol	51.57	62.63
CDX79296	Canola	plastid	15.38	59.02
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	63.68	56.8
PGSC0003DMT400012508	Potato	nucleus	9.97	56.45
GSMUA_Achr7P05430_001	Banana	nucleus	65.24	50.66
Bra022413.1-P	Field mustard	cytosol	28.21	44.39
HORVU4Hr1G059070.1	Barley	cytosol	36.75	39.45
CDX92325	Canola	nucleus	18.09	39.44
CDX91689	Canola	nucleus	14.67	33.77
HORVU1Hr1G038240.1	Barley	nucleus	14.53	27.72
HORVU4Hr1G075700.5	Barley	nucleus	13.53	22.84
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	12.39	20.86
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	12.68	20.55
Solyc06g062680.1.1	Tomato	cytosol	15.53	20.53
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	12.25	20.14
HORVU2Hr1G064650.4	Barley	nucleus	9.69	19.94
HORVU4Hr1G033990.7	Barley	golgi, nucleus	12.39	19.82
HORVU2Hr1G106810.1	Barley	nucleus	12.68	19.26
HORVU2Hr1G031260.2	Barley	nucleus, plastid	13.53	19.11
HORVU7Hr1G066510.3	Barley	plastid	11.11	17.85
HORVU7Hr1G052090.3	Barley	nucleus	11.4	16.19
HORVU2Hr1G046380.2	Barley	nucleus	9.54	15.19
HORVU2Hr1G123110.1	Barley	nucleus, plastid	14.96	9.88
HORVU2Hr1G122920.2	Barley	nucleus	13.68	9.49

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A0A287R691	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	EnsemblPlantsGene:HORVU5Hr1G050560	EnsemblPlants:HORVU5Hr1G050560.1	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI000B48055D	SEG:seg	:	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A287R691]

Coordinates

chrchr5H:+:393283783..393288512

Molecular Weight (calculated)

76296.1 Da

IEP (calculated)

9.207

GRAVY (calculated)

-0.496

Length

702 amino acids

Sequence
(BLAST)

001: GPDTCTRDPP PRSRPSKSVR SPSDGQAQPG FLPRGYKSAK PRKKNSILRS VMAAQAASSA SEGGSPAAAA AAAAAAASSF PATSLYVGDL DVSVQDAQLF
101: DVFAQIGGVV SVRVCRDVTS RKSLGYAYVN YNTPADAARA LEMLNFTPIN GRPIRIMYSN RDPSLRKSGT ANIFIKNLDK SIDNKALHDT FCVFGNILSC
201: KVATDPAGES KGYGFVQYER DEAAHAAIEK LNGMLMNDKK VYVGPFVRKQ ERDNSPGSVK FNNVYVKNLA ETTTEDDLKE IFGKFGTITS VVVMRDGDGR
301: SKCFGFVNFE SPDEAALAVQ DLNGKKFSDK EWYVGRAQKK SEREMELKEK FEKNLQEAAD KYQNTNLYLK NLDDTVDDEK LRELFAEFGT ITSCKVMRDS
401: NGASRGSGFV AFKSADDASR ALAEMNNKMV GNKPLYVALA QRKEDRKARL QAQFSQMRPV PMAQTVGPRM QMLPPGVPVG QQMFYGQPPA FINPQPGFGF
501: QQPFMPGMRP GGAPMPNFMM PMVQQGQQPQ RPAGRRAGAG GMQQSMQMGQ QQMMGRGGGR GYRYPTGRGM PDPAMHGVGG VMTSPYEMGG MPMRDAGASQ
601: PVPIGALASA LANSPPETQR MMLGENLYPL VDQLEHDQAA KVTGMLLEMD QTEVLHLLES PDALKAKVAE AMEVLRSAQQ HTNQSPEQQL ASLSLNDGLI
701: SS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.