Factsheet for HORVU7Hr1G056460.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G087390.3
HORVU5Hr1G050560.1
HORVU7Hr1G063970.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	HORVU2Hr1G087390.3	AT1G49760.1	21798944
AT2G43970.1	HORVU5Hr1G050560.1	AT1G49760.1	21798944
AT2G43970.1	HORVU7Hr1G063970.1	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G265700.1	Wheat	nucleus	86.92	86.26
TraesCS7B01G166700.1	Wheat	nucleus	80.77	80.15
TraesCS7D01G269000.1	Wheat	nucleus	80.26	79.64
Zm00001d031707_P001	Maize	nucleus	59.23	53.72
Os08t0542900-01	Rice	nucleus	58.72	53.63
EES15258	Sorghum	nucleus	59.23	52.86
VIT_09s0002g07980.t01	Wine grape	cytosol	8.46	48.53
VIT_05s0094g01400.t01	Wine grape	mitochondrion	36.15	43.38
GSMUA_Achr3P19230_001	Banana	nucleus	46.15	39.56
GSMUA_Achr6P18240_001	Banana	nucleus	45.38	38.56
HORVU5Hr1G029110.1	Barley	nucleus	43.33	36.58
CDY17896	Canola	nucleus	41.03	35.32
KRG97304	Soybean	nucleus	41.28	34.4
KRH69036	Soybean	nucleus	41.54	34.03
HORVU4Hr1G014800.1	Barley	nucleus	42.05	33.95
Solyc08g015650.2.1	Tomato	nucleus	39.49	33.77
GSMUA_Achr2P11420_001	Banana	mitochondrion	42.05	33.27
CDX79791	Canola	nucleus	42.31	33.0
PGSC0003DMT400064931	Potato	nucleus	38.72	32.47
Bra004795.1-P	Field mustard	nucleus	40.51	31.92
Zm00001d020113_P001	Maize	cytosol	31.79	31.16
Solyc12g019000.1.1	Tomato	nucleus	37.69	31.08
AT2G43970.1	Thale cress	nucleus	41.03	29.36
Solyc12g096640.1.1	Tomato	nucleus, plastid	35.9	27.29
PGSC0003DMT400075259	Potato	nucleus	35.13	26.45
HORVU3Hr1G072800.1	Barley	nucleus	29.23	22.53

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904
EnsemblPlantsGene:HORVU7Hr1G056460	EnsemblPlants:HORVU7Hr1G056460.1	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388
InterPro:La_HTH	InterPro:Lupus_La	UniProt:M0WL11	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF54	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000295DBFD	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:235075668..235080845

Molecular Weight (calculated)

42922.2 Da

IEP (calculated)

6.997

GRAVY (calculated)

-0.776

Length

390 amino acids

Sequence
(BLAST)

001: MAQDEVPESS SPSSAATGRL NAAAPEFTPR SAAQHQARPH RRGPHHQHHH HHQPHHQHQQ QYRHQHHHQG DGEGDAAAVV DNAQLVLPEE LARRVVKQVE
101: FYFSDVNLAT TDHLMKYITK DPDGFVPMTV VASFRKIREL IDRSLLPGAL RTSTELVVSD DGKMVRRRVP FSDVDAEEVQ SRIIVAERLP EDHRFQNLMR
201: IFSTVGSVKS IRTCYPQGID ISAGKSSRIE MIFANKLHAF VEYETVEDAE KAVAEFIGGR SLRDGPKAHS LLDCLKHGVG QGRKGGDEEA ADEDDPEEYE
301: AEDAAQGEDG FYDKAGMRQG RGRGRGGRGR GRGPYHGQSG HPIGTPPSNH SVEHPVVSKP PPGPRMPDGT KGFAMGRGKP QVSPAVLSDV

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.