Factsheet for HORVU3Hr1G072800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019729_P001	Maize	nucleus	13.44	75.56
TraesCS3A01G293900.1	Wheat	nucleus	55.53	57.35
TraesCS3B01G328600.1	Wheat	nucleus	53.56	55.31
TraesCS3D01G293700.1	Wheat	nucleus	50.2	52.7
VIT_10s0003g03190.t01	Wine grape	nucleus	30.04	44.44
KXG33403	Sorghum	nucleus	37.94	42.57
Solyc02g070550.2.1	Tomato	nucleus	30.24	40.91
Zm00001d043418_P136	Maize	nucleus	36.36	40.0
KRH21060	Soybean	nucleus	30.83	39.0
KRH11196	Soybean	nucleus	30.83	38.52
PGSC0003DMT400054517	Potato	nucleus	29.84	38.32
CDY03229	Canola	nucleus	28.46	37.02
Bra017566.1-P	Field mustard	nucleus	28.06	36.69
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	32.81	36.32
CDY35155	Canola	nucleus	27.87	36.06
CDY68074	Canola	nucleus	26.88	34.87
CDY33465	Canola	nucleus	26.28	34.02
Bra025027.1-P	Field mustard	nucleus	26.28	34.02
AT5G46250.1	Thale cress	nucleus	26.28	31.52
HORVU7Hr1G056460.1	Barley	nucleus	22.53	29.23
HORVU5Hr1G029110.1	Barley	nucleus	25.89	28.36
HORVU4Hr1G014800.1	Barley	nucleus	25.1	26.29

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A287LM18	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:1990904
EnsemblPlantsGene:HORVU3Hr1G072800	EnsemblPlants:HORVU3Hr1G072800.1	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388
InterPro:La_HTH	InterPro:Lupus_La	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302
PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000B4701D8	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:548571578..548580645

Molecular Weight (calculated)

53429.1 Da

IEP (calculated)

5.518

GRAVY (calculated)

-0.419

Length

506 amino acids

Sequence
(BLAST)

001: VAAAPQPPAT SSGGDRSAGD SAPLIPSGMD GQAPHPVAVA PKSPPQPPPR LDMEAEDDPV VVPDAADAAS SEASKVGAHG VAPLLSTSSL LKMEDDPVVV
101: PDTVEPASSE ASEVGAGGVV LLQPPSLSLE AEEDPLIVLG TSETASLEAT NVGTGVVVPS PPLEAGDDPL ILPGTDASLE ASDVLTTGVV LTDELRDKIV
201: KQVEYYFSDE NLPTDEFMLK FVMKNKEGLG NVPLGVIASF RKMKKLVQDH SAIEAALRTS SKLVVSSNGK RVRRLHPLPC NELKDVKRRT VVVENLPLDF
301: SLESLQEKFG SVGKIMKITI HDPHAVGESA ASKKPDFMLS NKVHAIVEYE AVEAAEKAVA TLNDERNWRT GMRVILLAKR SVVGSGKHIQ SSKENHGTVS
401: RKNNEGQFSK EVQQSASEKN GGADSGEVAS DKENVNCDVN HEEVRQHQRT NASGGRKGRY RSQGHGSSPT IPGSDPANKP ISGPRMPDGT RGFTMGRGRS
501: LPLPKA

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.