Factsheet for Zm00001d019729_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043418_P136	Maize	nucleus	93.33	18.26
KXG33403	Sorghum	nucleus	87.78	17.52
VIT_10s0003g03190.t01	Wine grape	nucleus	57.78	15.2
TraesCS3D01G293700.1	Wheat	nucleus	77.78	14.52
TraesCS3B01G328600.1	Wheat	nucleus	77.78	14.29
TraesCS3A01G293900.1	Wheat	nucleus	75.56	13.88
HORVU3Hr1G072800.1	Barley	nucleus	75.56	13.44
Solyc02g070550.2.1	Tomato	nucleus	53.33	12.83
CDY68074	Canola	nucleus	55.56	12.82
Bra025027.1-P	Field mustard	nucleus	54.44	12.53
CDY33465	Canola	nucleus	54.44	12.53
Bra017566.1-P	Field mustard	nucleus	51.11	11.89
KRH11196	Soybean	nucleus	53.33	11.85
CDY35155	Canola	nucleus	51.11	11.76
KRH21060	Soybean	nucleus	52.22	11.75
PGSC0003DMT400054517	Potato	nucleus	51.11	11.68
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	58.89	11.6
CDY03229	Canola	nucleus	50.0	11.57
AT5G46250.1	Thale cress	nucleus	52.22	11.14
Zm00001d031707_P001	Maize	nucleus	40.0	8.37
Zm00001d032397_P001	Maize	nucleus	35.56	7.75
Zm00001d007279_P001	Maize	nucleus	38.89	7.45
Zm00001d023987_P001	Maize	nucleus	37.78	6.94
Zm00001d018613_P004	Maize	nucleus	38.89	6.93
Zm00001d020113_P001	Maize	cytosol	23.33	5.28

Protein Annotations

EnsemblPlants:Zm00001d019729_P001	EnsemblPlants:Zm00001d019729_T001	EnsemblPlantsGene:Zm00001d019729	Gene3D:1.10.10.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR006630	InterPro:IPR036388	InterPro:La_HTH	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	PFscan:PS50961	ProteinID:ONM53665.1	SUPFAM:SSF46785
UniParc:UPI00084559C7	UniProt:A0A1D6I059	MapMan:35.2	:	:	:

Description

La-related protein 6A

Coordinates

chr7:-:54271371..54271981

Molecular Weight (calculated)

10082.3 Da

IEP (calculated)

10.021

GRAVY (calculated)

-0.291

Length

90 amino acids

Sequence
(BLAST)

1: MKKLVQDLSV IEAALRTSSK LVVSSNGKRV RRLHPLPHKE LKDSKKSTVL VENLPPDFSM ESIQEKIATV GKFSQAHVLI EYEVVEAAEK

Best Arabidopsis Sequence Match ( AT5G46250.3 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAVTTLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDVKG

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.