Factsheet for Bra025027.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018084.1-P
Bra019524.1-P
Bra024839.1-P
Bra024840.1-P
Bra033773.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46250.1	Bra024839.1-P	AT2G01950.1	19000166
AT5G46250.1	Bra024840.1-P	AT2G01950.1	19000166
AT5G46250.1	Bra018084.1-P	AT3G48100.1	18642946
AT5G46250.1	Bra019524.1-P	AT3G48100.1	18642946
AT5G46250.1	Bra033773.1-P	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33465	Canola	nucleus	94.63	94.63
Bra017566.1-P	Field mustard	nucleus	65.73	66.41
AT5G46250.1	Thale cress	nucleus	60.1	55.69
Zm00001d019729_P001	Maize	nucleus	12.53	54.44
VIT_10s0003g03190.t01	Wine grape	nucleus	43.73	50.0
Solyc02g070550.2.1	Tomato	nucleus	39.13	40.91
PGSC0003DMT400054517	Potato	nucleus	38.87	38.58
KRH21060	Soybean	nucleus	39.39	38.5
KRH11196	Soybean	nucleus	39.13	37.78
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	34.27	29.32
KXG33403	Sorghum	nucleus	32.99	28.6
TraesCS3B01G328600.1	Wheat	nucleus	35.29	28.16
Zm00001d043418_P136	Maize	nucleus	32.48	27.61
TraesCS3A01G293900.1	Wheat	nucleus	34.02	27.14
TraesCS3D01G293700.1	Wheat	nucleus	33.25	26.97
HORVU3Hr1G072800.1	Barley	nucleus	34.02	26.28
Bra022387.1-P	Field mustard	nucleus	29.16	25.73
Bra001733.1-P	Field mustard	nucleus	29.16	24.89
Bra004795.1-P	Field mustard	nucleus	27.37	21.62

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra025027	EnsemblPlants:Bra025027.1	EnsemblPlants:Bra025027.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630	InterPro:IPR012677
InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	UniProt:M4E8C1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102	PFscan:PS50961	PANTHER:PTHR22792
PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00715	SUPFAM:SSF46785
SUPFAM:SSF54928	UniParc:UPI000253FBD9	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

AT5G46250 (E=1e-114) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:-:24757833..24760229

Molecular Weight (calculated)

43217.1 Da

IEP (calculated)

7.164

GRAVY (calculated)

-0.971

Length

391 amino acids

Sequence
(BLAST)

001: METPSISTVN PQAVEDMISS TADISKPQPQ PPSHEVDSSP VAVSSDGGVV VVSEIPSDDG LDHERNIGED RDHPVEYYFS DENLPTDKFL LNAMKKNKKG
101: FVPISSIATF HKMKKLTRDL DLIVSALKES SFLVVSSDGK KVKRLSPLPE ARDPKVFTVL VENLPEDHSD ENIRAIFGKA GSIKSVSICD PNAAEESEKG
201: CKKDKFIRTR LHAFVEYETV EAAEKAAATL NNEQDWRNGL RVKLLEQAVK YAQRRPARKE VDPEKDNAGR VHDQTGGEEN KNSNEHQHHR HHHHHSDTPA
301: DNDGGDKNGN KDRTRGRGRR QNHQGSNGIV HGTSPSSSSS FHHNYNHHHP VEVSKRPPGP KMPDGTRGFT MGRGKPLSTP PPTSAQTSHE V

Best Arabidopsis Sequence Match ( AT5G46250.1 )
(BLAST)

001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV

Arabidopsis Description

LARP6ALa-related protein 6A [Source:UniProtKB/Swiss-Prot;Acc:Q94A38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.