Factsheet for Bra001733.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82312	Canola	nucleus	85.37	90.72
CDY22991	Canola	nucleus	76.64	81.44
AT3G19090.2	Thale cress	nucleus	77.73	73.86
Bra022387.1-P	Field mustard	nucleus	66.81	69.07
VIT_03s0063g01050.t01	Wine grape	nucleus	48.91	54.37
KRH50235	Soybean	nucleus	47.16	54.14
KRH71184	Soybean	nucleus	46.51	52.72
PGSC0003DMT400066353	Potato	nucleus	32.53	52.65
Solyc01g108310.2.1	Tomato	nucleus	42.58	48.51
PGSC0003DMT400083493	Potato	nucleus	41.7	46.47
Solyc10g050550.1.1	Tomato	nucleus	39.74	44.17
Os07t0102500-01	Rice	nucleus	38.86	40.64
Os03t0566500-01	Rice	nucleus, plastid	36.24	38.69
TraesCS2B01G285700.1	Wheat	nucleus	37.34	38.34
TraesCS2D01G265900.1	Wheat	nucleus	37.34	38.26
TraesCS2A01G256900.1	Wheat	nucleus	37.34	37.92
GSMUA_Achr4P23770_001	Banana	nucleus	38.86	37.87
Zm00001d032397_P001	Maize	nucleus	33.84	37.53
KXG38156	Sorghum	nucleus	36.9	35.96
Zm00001d018613_P004	Maize	nucleus	39.3	35.64
EER97821	Sorghum	nucleus	39.96	35.19
Bra025027.1-P	Field mustard	nucleus	24.89	29.16
Bra004795.1-P	Field mustard	nucleus	31.0	28.69
Bra017566.1-P	Field mustard	nucleus	24.02	28.42

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	InterPro:Ataxin-2_C	EnsemblPlantsGene:Bra001733	EnsemblPlants:Bra001733.1
EnsemblPlants:Bra001733.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030529	GO:GO:1990904	InterPro:IPR000504	InterPro:IPR006630
InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La	UniProt:M4CC03
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PFAM:PF07145	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF62	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI00025404E8	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT3G19090 (E=4e-163) | RNA-binding protein, putative

Coordinates

chrA03:+:18152354..18155071

Molecular Weight (calculated)

49829.9 Da

IEP (calculated)

9.563

GRAVY (calculated)

-0.545

Length

458 amino acids

Sequence
(BLAST)

001: MAQMQREPVE SVTKETTEKK ILDGGGGGGG GGSSASKASS FKFNAQAPEF VPRSHATALT PQVSPISGYF YPCFHYNELS IGGCSGGGGV TGGSQSSDWI
101: FVGGGDPVHH QNIHDPTAAF YVSNPVVQFP ANQNLSSSSK SLLSDDLRLK IVKQVEYQFT DMSLLANESI SKHINKDPEG YVPISYIAST KKIKALTSHH
201: HLVALALRSS SKLVVSEDNK KVRRKIPFTD RDREELQGRT VVVENLPDDH SYQNLEKIFG VVGNVKAIRI CHPPESNTSR PKGDFLMSNK IHALIEYDHT
301: VVADKAVEKL NDERNWRKGL RVRLLLRCSP KSVLKHRRNF DGILIDDESP YESGEDSPRL HLTEQQLDND GDDNNIGGLW GKGRGKGRGR SPRSYALGGG
401: GHSFGIGLGL GLSIGSMSRS LGLHESSSPK TATKGPRMPD GTRGFTMGRG KTFYLTLT

Best Arabidopsis Sequence Match ( AT3G19090.1 )
(BLAST)

001: MAQMQREEVE SVTTEKKRLD GGGGSSGAQA TAFKFNAQAP EFVPRSHTTA PAPQVSPVSG YFYPCFHYNG GCIGGCGGGV CGGGGTGVGT QSSDWIYVGG
101: GDPTAQHQHV HDPAAAFYIS NPAVQFPASQ NSSSSSKNLL SDDLRLKIVK QVEYQFTDMS LLANESISKH ISKDPEGYVP VSYIASTKKI KALTSNHHLV
201: SLALRSSSKL VVSEDGKKVK RTSQFTDRDR EELQGRTVVA ENLPDDHSYQ NLEKIFGVVG NVKAIRICHP PESNSSRPKG DFLMSNKIHA LIEYDNTVIA
301: DKAVEKLNDE RNWRKGLRVR LLLRCSPKSV LKNRRNFDGI LIDDELPSYE SGEDSPRLHL TESQLDNDGD DNNVGGLWGK GRGKGRGRSP RSYAVGGGGR
401: SFGIGLGVSL GIPSLGSHES SSPKTATKGP RMPDGTRGFT MGRGKPSISL SPNNL

Arabidopsis Description

RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLZ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.